Cargando…
Master curve of boosted diffusion for 10 catalytic enzymes
Molecular agitation more rapid than thermal Brownian motion is reported for cellular environments, motor proteins, synthetic molecular motors, enzymes, and common chemical reactions, yet that chemical activity coupled to molecular motion contrasts with generations of accumulated knowledge about diff...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7703626/ https://www.ncbi.nlm.nih.gov/pubmed/33168730 http://dx.doi.org/10.1073/pnas.2019810117 |
_version_ | 1783616670261051392 |
---|---|
author | Jee, Ah-Young Tlusty, Tsvi Granick, Steve |
author_facet | Jee, Ah-Young Tlusty, Tsvi Granick, Steve |
author_sort | Jee, Ah-Young |
collection | PubMed |
description | Molecular agitation more rapid than thermal Brownian motion is reported for cellular environments, motor proteins, synthetic molecular motors, enzymes, and common chemical reactions, yet that chemical activity coupled to molecular motion contrasts with generations of accumulated knowledge about diffusion at equilibrium. To test the limits of this idea, a critical testbed is the mobility of catalytically active enzymes. Sentiment is divided about the reality of enhanced enzyme diffusion, with evidence for and against. Here a master curve shows that the enzyme diffusion coefficient increases in proportion to the energy release rate—the product of Michaelis-Menten reaction rate and Gibbs free energy change (ΔG)—with a highly satisfactory correlation coefficient of 0.97. For 10 catalytic enzymes (urease, acetylcholinesterase, seven enzymes from the glucose cascade cycle, and one other), our measurements span from a roughly 40% enhanced diffusion coefficient at a high turnover rate and negative ΔG to no enhancement at a slow turnover rate and positive ΔG. Moreover, two independent measures of mobility show consistency, provided that one avoids undesirable fluorescence photophysics. The master curve presented here quantifies the limits of both ideas, that enzymes display enhanced diffusion and that they do not within instrumental resolution, and has possible implications for understanding enzyme mobility in cellular environments. The striking linear dependence of ΔG for the exergonic enzymes (ΔG <0), together with the vanishing effect for endergonic enzyme (ΔG >0), are consistent with a physical picture in which the mechanism boosting the diffusion is an active one, utilizing the available work from the chemical reaction. |
format | Online Article Text |
id | pubmed-7703626 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-77036262020-12-10 Master curve of boosted diffusion for 10 catalytic enzymes Jee, Ah-Young Tlusty, Tsvi Granick, Steve Proc Natl Acad Sci U S A Physical Sciences Molecular agitation more rapid than thermal Brownian motion is reported for cellular environments, motor proteins, synthetic molecular motors, enzymes, and common chemical reactions, yet that chemical activity coupled to molecular motion contrasts with generations of accumulated knowledge about diffusion at equilibrium. To test the limits of this idea, a critical testbed is the mobility of catalytically active enzymes. Sentiment is divided about the reality of enhanced enzyme diffusion, with evidence for and against. Here a master curve shows that the enzyme diffusion coefficient increases in proportion to the energy release rate—the product of Michaelis-Menten reaction rate and Gibbs free energy change (ΔG)—with a highly satisfactory correlation coefficient of 0.97. For 10 catalytic enzymes (urease, acetylcholinesterase, seven enzymes from the glucose cascade cycle, and one other), our measurements span from a roughly 40% enhanced diffusion coefficient at a high turnover rate and negative ΔG to no enhancement at a slow turnover rate and positive ΔG. Moreover, two independent measures of mobility show consistency, provided that one avoids undesirable fluorescence photophysics. The master curve presented here quantifies the limits of both ideas, that enzymes display enhanced diffusion and that they do not within instrumental resolution, and has possible implications for understanding enzyme mobility in cellular environments. The striking linear dependence of ΔG for the exergonic enzymes (ΔG <0), together with the vanishing effect for endergonic enzyme (ΔG >0), are consistent with a physical picture in which the mechanism boosting the diffusion is an active one, utilizing the available work from the chemical reaction. National Academy of Sciences 2020-11-24 2020-11-09 /pmc/articles/PMC7703626/ /pubmed/33168730 http://dx.doi.org/10.1073/pnas.2019810117 Text en Copyright © 2020 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Jee, Ah-Young Tlusty, Tsvi Granick, Steve Master curve of boosted diffusion for 10 catalytic enzymes |
title | Master curve of boosted diffusion for 10 catalytic enzymes |
title_full | Master curve of boosted diffusion for 10 catalytic enzymes |
title_fullStr | Master curve of boosted diffusion for 10 catalytic enzymes |
title_full_unstemmed | Master curve of boosted diffusion for 10 catalytic enzymes |
title_short | Master curve of boosted diffusion for 10 catalytic enzymes |
title_sort | master curve of boosted diffusion for 10 catalytic enzymes |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7703626/ https://www.ncbi.nlm.nih.gov/pubmed/33168730 http://dx.doi.org/10.1073/pnas.2019810117 |
work_keys_str_mv | AT jeeahyoung mastercurveofboosteddiffusionfor10catalyticenzymes AT tlustytsvi mastercurveofboosteddiffusionfor10catalyticenzymes AT granicksteve mastercurveofboosteddiffusionfor10catalyticenzymes |