The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)

Dioscorea esculenta (Lour.) Burkill is an essential tuber crop with pharmacological effects in the family Dioscoreaceae. The complete chloroplast genome of D. esculenta was determined in this study. The total genome size is 153, 437 bp in length and demonstrates a typical quadripartite structure con...

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Autores principales: Chen, Xin, Cai, Lijuan, Zhang, Yu, Su, Wenzheng, Li, Bicong, Zhou, Qinghong, Zhu, Qianglong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7703703/
https://www.ncbi.nlm.nih.gov/pubmed/33367107
http://dx.doi.org/10.1080/23802359.2020.1832593
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author Chen, Xin
Cai, Lijuan
Zhang, Yu
Su, Wenzheng
Li, Bicong
Zhou, Qinghong
Zhu, Qianglong
author_facet Chen, Xin
Cai, Lijuan
Zhang, Yu
Su, Wenzheng
Li, Bicong
Zhou, Qinghong
Zhu, Qianglong
author_sort Chen, Xin
collection PubMed
description Dioscorea esculenta (Lour.) Burkill is an essential tuber crop with pharmacological effects in the family Dioscoreaceae. The complete chloroplast genome of D. esculenta was determined in this study. The total genome size is 153, 437 bp in length and demonstrates a typical quadripartite structure containing a large single copy (LSC, 83,628 bp) and a small single copy (SSC, 18,893 bp), separated by a pair of inverted repeats (IRa, IRb) of 25,458 bp. The GC content of the complete chloroplast genome sequence is 37.07%. A total of 131 genes were predicted including 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic tree analysis of 25 species belonging to the genus Dioscorea indicated that D. esculenta and D. sansibarensis were clustered into one branch.
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spelling pubmed-77037032020-12-22 The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae) Chen, Xin Cai, Lijuan Zhang, Yu Su, Wenzheng Li, Bicong Zhou, Qinghong Zhu, Qianglong Mitochondrial DNA B Resour Mitogenome Announcement Dioscorea esculenta (Lour.) Burkill is an essential tuber crop with pharmacological effects in the family Dioscoreaceae. The complete chloroplast genome of D. esculenta was determined in this study. The total genome size is 153, 437 bp in length and demonstrates a typical quadripartite structure containing a large single copy (LSC, 83,628 bp) and a small single copy (SSC, 18,893 bp), separated by a pair of inverted repeats (IRa, IRb) of 25,458 bp. The GC content of the complete chloroplast genome sequence is 37.07%. A total of 131 genes were predicted including 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic tree analysis of 25 species belonging to the genus Dioscorea indicated that D. esculenta and D. sansibarensis were clustered into one branch. Taylor & Francis 2020-11-20 /pmc/articles/PMC7703703/ /pubmed/33367107 http://dx.doi.org/10.1080/23802359.2020.1832593 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chen, Xin
Cai, Lijuan
Zhang, Yu
Su, Wenzheng
Li, Bicong
Zhou, Qinghong
Zhu, Qianglong
The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title_full The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title_fullStr The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title_full_unstemmed The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title_short The complete chloroplast genome sequence of the Dioscorea esculenta (Lour.) Burkill (Dioscoreaceae)
title_sort complete chloroplast genome sequence of the dioscorea esculenta (lour.) burkill (dioscoreaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7703703/
https://www.ncbi.nlm.nih.gov/pubmed/33367107
http://dx.doi.org/10.1080/23802359.2020.1832593
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