Cargando…

Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)

The masked birch caterpillar, Drepana arcuata Walker (Lepidoptera: Drepanidae), and other Drepanoidea (Lepidoptera) species are excellent organisms for investigating the function and evolution of vibratory communication and sociality in caterpillars. We present a de novo assembled draft genome and f...

Descripción completa

Detalles Bibliográficos
Autores principales: Yadav, Chanchal, Smith, Myron, Ogunremi, Dele, Yack, Jayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7704289/
https://www.ncbi.nlm.nih.gov/pubmed/33299908
http://dx.doi.org/10.1016/j.dib.2020.106531
_version_ 1783616790991994880
author Yadav, Chanchal
Smith, Myron
Ogunremi, Dele
Yack, Jayne
author_facet Yadav, Chanchal
Smith, Myron
Ogunremi, Dele
Yack, Jayne
author_sort Yadav, Chanchal
collection PubMed
description The masked birch caterpillar, Drepana arcuata Walker (Lepidoptera: Drepanidae), and other Drepanoidea (Lepidoptera) species are excellent organisms for investigating the function and evolution of vibratory communication and sociality in caterpillars. We present a de novo assembled draft genome and functional annotation for D. arcuata, using a combination of short and long sequencing reads generated by Illumina HiSeq X and Oxford Nanopore Technologies (ONT) MinION sequencing platforms, respectively. A total of 460,694,612 150bp paired-end Illumina and 395,890 ONT raw reads were assembled into 11,493 scaffolds spanning a genome size of 270.5Mb. The resulting D. arcuata genome has a GC content of 38.79%, repeat content of 8.26%, is 86.5% complete based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment, and comprises 10,398 predicted protein-coding genes. These data represent the first genomic resources for the lepidopteran superfamily Drepanoidea. Although the order Lepidoptera comprises numerous ecologically and economically important species, assembled genomes and annotations are available for < 1% of the total species. These data can be further utilized for research on Lepidoptera genomics as well as on the function and evolution of vibratory communication and sociality in larval insects.
format Online
Article
Text
id pubmed-7704289
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-77042892020-12-08 Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea) Yadav, Chanchal Smith, Myron Ogunremi, Dele Yack, Jayne Data Brief Data Article The masked birch caterpillar, Drepana arcuata Walker (Lepidoptera: Drepanidae), and other Drepanoidea (Lepidoptera) species are excellent organisms for investigating the function and evolution of vibratory communication and sociality in caterpillars. We present a de novo assembled draft genome and functional annotation for D. arcuata, using a combination of short and long sequencing reads generated by Illumina HiSeq X and Oxford Nanopore Technologies (ONT) MinION sequencing platforms, respectively. A total of 460,694,612 150bp paired-end Illumina and 395,890 ONT raw reads were assembled into 11,493 scaffolds spanning a genome size of 270.5Mb. The resulting D. arcuata genome has a GC content of 38.79%, repeat content of 8.26%, is 86.5% complete based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment, and comprises 10,398 predicted protein-coding genes. These data represent the first genomic resources for the lepidopteran superfamily Drepanoidea. Although the order Lepidoptera comprises numerous ecologically and economically important species, assembled genomes and annotations are available for < 1% of the total species. These data can be further utilized for research on Lepidoptera genomics as well as on the function and evolution of vibratory communication and sociality in larval insects. Elsevier 2020-11-14 /pmc/articles/PMC7704289/ /pubmed/33299908 http://dx.doi.org/10.1016/j.dib.2020.106531 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Yadav, Chanchal
Smith, Myron
Ogunremi, Dele
Yack, Jayne
Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title_full Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title_fullStr Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title_full_unstemmed Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title_short Draft genome assembly and annotation of the masked birch caterpillar, Drepana arcuata (Lepidoptera: Drepanoidea)
title_sort draft genome assembly and annotation of the masked birch caterpillar, drepana arcuata (lepidoptera: drepanoidea)
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7704289/
https://www.ncbi.nlm.nih.gov/pubmed/33299908
http://dx.doi.org/10.1016/j.dib.2020.106531
work_keys_str_mv AT yadavchanchal draftgenomeassemblyandannotationofthemaskedbirchcaterpillardrepanaarcuatalepidopteradrepanoidea
AT smithmyron draftgenomeassemblyandannotationofthemaskedbirchcaterpillardrepanaarcuatalepidopteradrepanoidea
AT ogunremidele draftgenomeassemblyandannotationofthemaskedbirchcaterpillardrepanaarcuatalepidopteradrepanoidea
AT yackjayne draftgenomeassemblyandannotationofthemaskedbirchcaterpillardrepanaarcuatalepidopteradrepanoidea