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The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae)
The mitochondrial genome of Etrocorema hochii (Wu, 1938), the first representative of Etrocorema, was sequenced and annotated in this study. The complete circular mitochondrial genome (mitogenome) was 15,854 bp in length using Illumina sequencing and harboured 13 protein-coding genes (PCGs), 22 tran...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706475/ https://www.ncbi.nlm.nih.gov/pubmed/33365685 http://dx.doi.org/10.1080/23802359.2019.1644565 |
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author | Liu, Zhuangzhuang Wang, Ying Li, Weihai Cao, Jinjun |
author_facet | Liu, Zhuangzhuang Wang, Ying Li, Weihai Cao, Jinjun |
author_sort | Liu, Zhuangzhuang |
collection | PubMed |
description | The mitochondrial genome of Etrocorema hochii (Wu, 1938), the first representative of Etrocorema, was sequenced and annotated in this study. The complete circular mitochondrial genome (mitogenome) was 15,854 bp in length using Illumina sequencing and harboured 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), two ribosomal RNA genes (rRNA), and one control region in the typical stonefly gene order. The nucleotide composition of this genome is A (36.0%), T (31.4%), C (20.9%), and G (11.7%). All PCGs use the typical start codon ATN, except ND1, ND2, and COI, which start with TTG, GTG, and ACC, respectively. Only the ND5 genes terminated with single T––, and the rest use the stop codon TAA/TAG. We used this new nucleotide information under Bayesian and maximum-likelihood analyses to explore the relationships of Pelidae. Phylogenetic analyses showed that E. hochii is closely related to the clade (Togoperla + Kamimuria), which is widely accepted view. |
format | Online Article Text |
id | pubmed-7706475 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77064752020-12-22 The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) Liu, Zhuangzhuang Wang, Ying Li, Weihai Cao, Jinjun Mitochondrial DNA B Resour Mitogenome Announcement The mitochondrial genome of Etrocorema hochii (Wu, 1938), the first representative of Etrocorema, was sequenced and annotated in this study. The complete circular mitochondrial genome (mitogenome) was 15,854 bp in length using Illumina sequencing and harboured 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNA), two ribosomal RNA genes (rRNA), and one control region in the typical stonefly gene order. The nucleotide composition of this genome is A (36.0%), T (31.4%), C (20.9%), and G (11.7%). All PCGs use the typical start codon ATN, except ND1, ND2, and COI, which start with TTG, GTG, and ACC, respectively. Only the ND5 genes terminated with single T––, and the rest use the stop codon TAA/TAG. We used this new nucleotide information under Bayesian and maximum-likelihood analyses to explore the relationships of Pelidae. Phylogenetic analyses showed that E. hochii is closely related to the clade (Togoperla + Kamimuria), which is widely accepted view. Taylor & Francis 2019-07-22 /pmc/articles/PMC7706475/ /pubmed/33365685 http://dx.doi.org/10.1080/23802359.2019.1644565 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/ |
spellingShingle | Mitogenome Announcement Liu, Zhuangzhuang Wang, Ying Li, Weihai Cao, Jinjun The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title | The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title_full | The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title_fullStr | The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title_full_unstemmed | The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title_short | The complete mitochondrial genome of a stonefly species, Etrocorema hochii (Plecoptera: Pelidae) |
title_sort | complete mitochondrial genome of a stonefly species, etrocorema hochii (plecoptera: pelidae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706475/ https://www.ncbi.nlm.nih.gov/pubmed/33365685 http://dx.doi.org/10.1080/23802359.2019.1644565 |
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