Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)

The complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp i...

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Autores principales: Filyushin, Mikhail A., Beletsky, Alexey V., Kochieva, Elena Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706495/
https://www.ncbi.nlm.nih.gov/pubmed/33365644
http://dx.doi.org/10.1080/23802359.2019.1640090
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author Filyushin, Mikhail A.
Beletsky, Alexey V.
Kochieva, Elena Z.
author_facet Filyushin, Mikhail A.
Beletsky, Alexey V.
Kochieva, Elena Z.
author_sort Filyushin, Mikhail A.
collection PubMed
description The complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp inverted repeats (IRs). A total of 133 genes were annotated, including 80 protein-coding genes, 38 tRNA genes, 8 rRNA genes, and 7 pseudogenes. The overall GC contents of the plastid genome were 36.7%. Unlike A. sativum and A. obliquum in the leek, plastome infA gene is absent, and rpl23 gene is a pseudogene due to a 4 bp deletion and the formation of a premature stop codon.
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spelling pubmed-77064952020-12-22 Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae) Filyushin, Mikhail A. Beletsky, Alexey V. Kochieva, Elena Z. Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Allium porrum was determined by Illumina single-end sequencing. The complete plastid genome was 152,732 bp in length containing a large single copy (LSC) of 81,744 bp and a small single copy (SSC) of 17,910 bp, which were separated by a pair of 26,524 bp inverted repeats (IRs). A total of 133 genes were annotated, including 80 protein-coding genes, 38 tRNA genes, 8 rRNA genes, and 7 pseudogenes. The overall GC contents of the plastid genome were 36.7%. Unlike A. sativum and A. obliquum in the leek, plastome infA gene is absent, and rpl23 gene is a pseudogene due to a 4 bp deletion and the formation of a premature stop codon. Taylor & Francis 2019-07-22 /pmc/articles/PMC7706495/ /pubmed/33365644 http://dx.doi.org/10.1080/23802359.2019.1640090 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Filyushin, Mikhail A.
Beletsky, Alexey V.
Kochieva, Elena Z.
Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title_full Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title_fullStr Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title_short Characterization of the complete chloroplast genome of leek Allium porrum L. (Amaryllidaceae)
title_sort characterization of the complete chloroplast genome of leek allium porrum l. (amaryllidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706495/
https://www.ncbi.nlm.nih.gov/pubmed/33365644
http://dx.doi.org/10.1080/23802359.2019.1640090
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