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The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay
Castanopsis carlesii (Hemsl.) Hay. is a widely distributed and dominant tree species with significant ecological and economical values. In this study, the complete chloroplast genome sequence of C. carlesii was reported using the Illumina Hiseq 2500 platform. The complete chloroplast genome was 160,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706500/ https://www.ncbi.nlm.nih.gov/pubmed/33365639 http://dx.doi.org/10.1080/23802359.2019.1641437 |
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author | Sun, Rong-Xi Ye, Xue-Min Wang, Zhen-Li Lin, Xiao-Fan |
author_facet | Sun, Rong-Xi Ye, Xue-Min Wang, Zhen-Li Lin, Xiao-Fan |
author_sort | Sun, Rong-Xi |
collection | PubMed |
description | Castanopsis carlesii (Hemsl.) Hay. is a widely distributed and dominant tree species with significant ecological and economical values. In this study, the complete chloroplast genome sequence of C. carlesii was reported using the Illumina Hiseq 2500 platform. The complete chloroplast genome was 160,205 bp forming a typical quadripartite structure, with a pair of inverted repeated (IRs) regions of 25,670 bp, a large single copy (LSC) region of 89,849 bp, and a small single copy (SSC) region of 19,016 bp. A total of 124 functional genes were annotated, including 79 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The ML phylogenetic analysis showed that the genus Castanopsis formed a clade except Castanopsis fargesii. |
format | Online Article Text |
id | pubmed-7706500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77065002020-12-22 The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay Sun, Rong-Xi Ye, Xue-Min Wang, Zhen-Li Lin, Xiao-Fan Mitochondrial DNA B Resour Mitogenome Announcement Castanopsis carlesii (Hemsl.) Hay. is a widely distributed and dominant tree species with significant ecological and economical values. In this study, the complete chloroplast genome sequence of C. carlesii was reported using the Illumina Hiseq 2500 platform. The complete chloroplast genome was 160,205 bp forming a typical quadripartite structure, with a pair of inverted repeated (IRs) regions of 25,670 bp, a large single copy (LSC) region of 89,849 bp, and a small single copy (SSC) region of 19,016 bp. A total of 124 functional genes were annotated, including 79 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The ML phylogenetic analysis showed that the genus Castanopsis formed a clade except Castanopsis fargesii. Taylor & Francis 2019-07-17 /pmc/articles/PMC7706500/ /pubmed/33365639 http://dx.doi.org/10.1080/23802359.2019.1641437 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Sun, Rong-Xi Ye, Xue-Min Wang, Zhen-Li Lin, Xiao-Fan The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title | The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title_full | The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title_fullStr | The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title_full_unstemmed | The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title_short | The complete chloroplast genome of Castanopsis carlesii (Hemsl.) Hay |
title_sort | complete chloroplast genome of castanopsis carlesii (hemsl.) hay |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706500/ https://www.ncbi.nlm.nih.gov/pubmed/33365639 http://dx.doi.org/10.1080/23802359.2019.1641437 |
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