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The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chlo...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706551/ https://www.ncbi.nlm.nih.gov/pubmed/33365853 http://dx.doi.org/10.1080/23802359.2019.1666675 |
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author | Chen, Qi Zhang, Dequan |
author_facet | Chen, Qi Zhang, Dequan |
author_sort | Chen, Qi |
collection | PubMed |
description | Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chloroplast genome was 151,965 bp, with 38.4% overall GC content and exhibited typical quadripartite structure, a pair of IRs (inverted repeats) of 25,651 bp was separated by a small single copy (SSC) region of 17,498 bp and a large single copy (LSC) region of 83,165 bp. The cp genome contained 113 genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated C. coccinea var. mollis was closely related to Galeopsis tetrahit and Lamium galeobdolon. |
format | Online Article Text |
id | pubmed-7706551 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77065512020-12-22 The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) Chen, Qi Zhang, Dequan Mitochondrial DNA B Resour Mitogenome Announcement Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chloroplast genome was 151,965 bp, with 38.4% overall GC content and exhibited typical quadripartite structure, a pair of IRs (inverted repeats) of 25,651 bp was separated by a small single copy (SSC) region of 17,498 bp and a large single copy (LSC) region of 83,165 bp. The cp genome contained 113 genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated C. coccinea var. mollis was closely related to Galeopsis tetrahit and Lamium galeobdolon. Taylor & Francis 2019-09-18 /pmc/articles/PMC7706551/ /pubmed/33365853 http://dx.doi.org/10.1080/23802359.2019.1666675 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Chen, Qi Zhang, Dequan The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title | The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title_full | The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title_fullStr | The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title_short | The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) |
title_sort | complete chloroplast genome sequence of the medicinal plant colquhounia coccinea var. mollis (lamiaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706551/ https://www.ncbi.nlm.nih.gov/pubmed/33365853 http://dx.doi.org/10.1080/23802359.2019.1666675 |
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