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The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)

Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chlo...

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Autores principales: Chen, Qi, Zhang, Dequan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706551/
https://www.ncbi.nlm.nih.gov/pubmed/33365853
http://dx.doi.org/10.1080/23802359.2019.1666675
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author Chen, Qi
Zhang, Dequan
author_facet Chen, Qi
Zhang, Dequan
author_sort Chen, Qi
collection PubMed
description Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chloroplast genome was 151,965 bp, with 38.4% overall GC content and exhibited typical quadripartite structure, a pair of IRs (inverted repeats) of 25,651 bp was separated by a small single copy (SSC) region of 17,498 bp and a large single copy (LSC) region of 83,165 bp. The cp genome contained 113 genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated C. coccinea var. mollis was closely related to Galeopsis tetrahit and Lamium galeobdolon.
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spelling pubmed-77065512020-12-22 The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae) Chen, Qi Zhang, Dequan Mitochondrial DNA B Resour Mitogenome Announcement Colquhounia coccinea var. mollis is a medicinal plant commonly used in Dali area of southwest China. In this study, we sequenced the complete chloroplast (cp) genome sequence of C. coccinea var. mollis to investigate its phylogenetic relationship in the family Lamiaceae. The total length of the chloroplast genome was 151,965 bp, with 38.4% overall GC content and exhibited typical quadripartite structure, a pair of IRs (inverted repeats) of 25,651 bp was separated by a small single copy (SSC) region of 17,498 bp and a large single copy (LSC) region of 83,165 bp. The cp genome contained 113 genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic analysis indicated C. coccinea var. mollis was closely related to Galeopsis tetrahit and Lamium galeobdolon. Taylor & Francis 2019-09-18 /pmc/articles/PMC7706551/ /pubmed/33365853 http://dx.doi.org/10.1080/23802359.2019.1666675 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Qi
Zhang, Dequan
The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title_full The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title_fullStr The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title_full_unstemmed The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title_short The complete chloroplast genome sequence of the medicinal plant Colquhounia coccinea var. mollis (Lamiaceae)
title_sort complete chloroplast genome sequence of the medicinal plant colquhounia coccinea var. mollis (lamiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706551/
https://www.ncbi.nlm.nih.gov/pubmed/33365853
http://dx.doi.org/10.1080/23802359.2019.1666675
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