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The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706561/ https://www.ncbi.nlm.nih.gov/pubmed/33365640 http://dx.doi.org/10.1080/23802359.2019.1641440 |
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author | Zhu, Liu Ke-Song, Qin Bo-Qi, Li Cheng-Wen, Yu He, Cai Jun-Sheng, Zhang Jin-Xun, Li Zhu, Wang |
author_facet | Zhu, Liu Ke-Song, Qin Bo-Qi, Li Cheng-Wen, Yu He, Cai Jun-Sheng, Zhang Jin-Xun, Li Zhu, Wang |
author_sort | Zhu, Liu |
collection | PubMed |
description | The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (33.7%), C (22.8%), T (30.5%), and G (13.0%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. Results of phylogenetic analysis showed that Cricetulus had close relationship with Meriones. This study verifies the evolutionary status of the striped hamster in Cricetulus at the molecular level. The mitochondrial genome would be a significant supplement for the striped hamster genetic background. Results of phylogenetic analysis showed that the striped hamster had close relationship with C. griseus in Cricetulus. |
format | Online Article Text |
id | pubmed-7706561 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77065612020-12-22 The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis Zhu, Liu Ke-Song, Qin Bo-Qi, Li Cheng-Wen, Yu He, Cai Jun-Sheng, Zhang Jin-Xun, Li Zhu, Wang Mitochondrial DNA B Resour Mitogenome Announcemen The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (33.7%), C (22.8%), T (30.5%), and G (13.0%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. Results of phylogenetic analysis showed that Cricetulus had close relationship with Meriones. This study verifies the evolutionary status of the striped hamster in Cricetulus at the molecular level. The mitochondrial genome would be a significant supplement for the striped hamster genetic background. Results of phylogenetic analysis showed that the striped hamster had close relationship with C. griseus in Cricetulus. Taylor & Francis 2019-07-16 /pmc/articles/PMC7706561/ /pubmed/33365640 http://dx.doi.org/10.1080/23802359.2019.1641440 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcemen Zhu, Liu Ke-Song, Qin Bo-Qi, Li Cheng-Wen, Yu He, Cai Jun-Sheng, Zhang Jin-Xun, Li Zhu, Wang The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title | The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title_full | The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title_fullStr | The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title_full_unstemmed | The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title_short | The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis |
title_sort | complete mitochondrial genome of the striped hamster (cricetulus barabesis) china and its phylogenetic analysis |
topic | Mitogenome Announcemen |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706561/ https://www.ncbi.nlm.nih.gov/pubmed/33365640 http://dx.doi.org/10.1080/23802359.2019.1641440 |
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