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The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis

The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of...

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Autores principales: Zhu, Liu, Ke-Song, Qin, Bo-Qi, Li, Cheng-Wen, Yu, He, Cai, Jun-Sheng, Zhang, Jin-Xun, Li, Zhu, Wang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706561/
https://www.ncbi.nlm.nih.gov/pubmed/33365640
http://dx.doi.org/10.1080/23802359.2019.1641440
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author Zhu, Liu
Ke-Song, Qin
Bo-Qi, Li
Cheng-Wen, Yu
He, Cai
Jun-Sheng, Zhang
Jin-Xun, Li
Zhu, Wang
author_facet Zhu, Liu
Ke-Song, Qin
Bo-Qi, Li
Cheng-Wen, Yu
He, Cai
Jun-Sheng, Zhang
Jin-Xun, Li
Zhu, Wang
author_sort Zhu, Liu
collection PubMed
description The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (33.7%), C (22.8%), T (30.5%), and G (13.0%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. Results of phylogenetic analysis showed that Cricetulus had close relationship with Meriones. This study verifies the evolutionary status of the striped hamster in Cricetulus at the molecular level. The mitochondrial genome would be a significant supplement for the striped hamster genetic background. Results of phylogenetic analysis showed that the striped hamster had close relationship with C. griseus in Cricetulus.
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spelling pubmed-77065612020-12-22 The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis Zhu, Liu Ke-Song, Qin Bo-Qi, Li Cheng-Wen, Yu He, Cai Jun-Sheng, Zhang Jin-Xun, Li Zhu, Wang Mitochondrial DNA B Resour Mitogenome Announcemen The complete mitogenome sequence of the striped hamster was determined using long PCR. The genome was 16,282 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (33.7%), C (22.8%), T (30.5%), and G (13.0%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. Results of phylogenetic analysis showed that Cricetulus had close relationship with Meriones. This study verifies the evolutionary status of the striped hamster in Cricetulus at the molecular level. The mitochondrial genome would be a significant supplement for the striped hamster genetic background. Results of phylogenetic analysis showed that the striped hamster had close relationship with C. griseus in Cricetulus. Taylor & Francis 2019-07-16 /pmc/articles/PMC7706561/ /pubmed/33365640 http://dx.doi.org/10.1080/23802359.2019.1641440 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcemen
Zhu, Liu
Ke-Song, Qin
Bo-Qi, Li
Cheng-Wen, Yu
He, Cai
Jun-Sheng, Zhang
Jin-Xun, Li
Zhu, Wang
The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title_full The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title_fullStr The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title_full_unstemmed The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title_short The complete mitochondrial genome of the striped hamster (Cricetulus barabesis) China and its phylogenetic analysis
title_sort complete mitochondrial genome of the striped hamster (cricetulus barabesis) china and its phylogenetic analysis
topic Mitogenome Announcemen
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706561/
https://www.ncbi.nlm.nih.gov/pubmed/33365640
http://dx.doi.org/10.1080/23802359.2019.1641440
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