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The complete chloroplast genome sequence of Helicia shweliensis
Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC)...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706619/ https://www.ncbi.nlm.nih.gov/pubmed/33365608 http://dx.doi.org/10.1080/23802359.2019.1640086 |
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author | Wang, Yi Yuan, Xiaolong Saiyu, Ma Zhang, Jinfeng |
author_facet | Wang, Yi Yuan, Xiaolong Saiyu, Ma Zhang, Jinfeng |
author_sort | Wang, Yi |
collection | PubMed |
description | Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC) of 85,463 bp and a small single copy region (SSC) of 18,662 bp, which were separated by a pair of inverted repeat (IR) regions of 26,513 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.1% and the corresponding values of the LSC, SSC, and IR regions are 36.5, 31.8, and 42.9%, respectively. Further, phylogenomic analysis showed that V. paradoxa clustered in a unique clade in order Proteales. |
format | Online Article Text |
id | pubmed-7706619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77066192020-12-22 The complete chloroplast genome sequence of Helicia shweliensis Wang, Yi Yuan, Xiaolong Saiyu, Ma Zhang, Jinfeng Mitochondrial DNA B Resour Mitogenome Announcement Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC) of 85,463 bp and a small single copy region (SSC) of 18,662 bp, which were separated by a pair of inverted repeat (IR) regions of 26,513 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.1% and the corresponding values of the LSC, SSC, and IR regions are 36.5, 31.8, and 42.9%, respectively. Further, phylogenomic analysis showed that V. paradoxa clustered in a unique clade in order Proteales. Taylor & Francis 2019-07-13 /pmc/articles/PMC7706619/ /pubmed/33365608 http://dx.doi.org/10.1080/23802359.2019.1640086 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yi Yuan, Xiaolong Saiyu, Ma Zhang, Jinfeng The complete chloroplast genome sequence of Helicia shweliensis |
title | The complete chloroplast genome sequence of Helicia shweliensis |
title_full | The complete chloroplast genome sequence of Helicia shweliensis |
title_fullStr | The complete chloroplast genome sequence of Helicia shweliensis |
title_full_unstemmed | The complete chloroplast genome sequence of Helicia shweliensis |
title_short | The complete chloroplast genome sequence of Helicia shweliensis |
title_sort | complete chloroplast genome sequence of helicia shweliensis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706619/ https://www.ncbi.nlm.nih.gov/pubmed/33365608 http://dx.doi.org/10.1080/23802359.2019.1640086 |
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