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The complete chloroplast genome sequence of Helicia shweliensis

Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC)...

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Detalles Bibliográficos
Autores principales: Wang, Yi, Yuan, Xiaolong, Saiyu, Ma, Zhang, Jinfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706619/
https://www.ncbi.nlm.nih.gov/pubmed/33365608
http://dx.doi.org/10.1080/23802359.2019.1640086
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author Wang, Yi
Yuan, Xiaolong
Saiyu, Ma
Zhang, Jinfeng
author_facet Wang, Yi
Yuan, Xiaolong
Saiyu, Ma
Zhang, Jinfeng
author_sort Wang, Yi
collection PubMed
description Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC) of 85,463 bp and a small single copy region (SSC) of 18,662 bp, which were separated by a pair of inverted repeat (IR) regions of 26,513 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.1% and the corresponding values of the LSC, SSC, and IR regions are 36.5, 31.8, and 42.9%, respectively. Further, phylogenomic analysis showed that V. paradoxa clustered in a unique clade in order Proteales.
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spelling pubmed-77066192020-12-22 The complete chloroplast genome sequence of Helicia shweliensis Wang, Yi Yuan, Xiaolong Saiyu, Ma Zhang, Jinfeng Mitochondrial DNA B Resour Mitogenome Announcement Helicia shweliensis is a Critically Endangered species endemic to Yunnan, China. In this study, the complete chloroplast genome (cpDNA) sequence of H. shweliensis was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 157,151 bp in length, contains a large single copy region (LSC) of 85,463 bp and a small single copy region (SSC) of 18,662 bp, which were separated by a pair of inverted repeat (IR) regions of 26,513 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.1% and the corresponding values of the LSC, SSC, and IR regions are 36.5, 31.8, and 42.9%, respectively. Further, phylogenomic analysis showed that V. paradoxa clustered in a unique clade in order Proteales. Taylor & Francis 2019-07-13 /pmc/articles/PMC7706619/ /pubmed/33365608 http://dx.doi.org/10.1080/23802359.2019.1640086 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Yi
Yuan, Xiaolong
Saiyu, Ma
Zhang, Jinfeng
The complete chloroplast genome sequence of Helicia shweliensis
title The complete chloroplast genome sequence of Helicia shweliensis
title_full The complete chloroplast genome sequence of Helicia shweliensis
title_fullStr The complete chloroplast genome sequence of Helicia shweliensis
title_full_unstemmed The complete chloroplast genome sequence of Helicia shweliensis
title_short The complete chloroplast genome sequence of Helicia shweliensis
title_sort complete chloroplast genome sequence of helicia shweliensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706619/
https://www.ncbi.nlm.nih.gov/pubmed/33365608
http://dx.doi.org/10.1080/23802359.2019.1640086
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