Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides

Erysimum cheiranthoides is commonly known as treacle-mustard or wormseed wallflower with value for reducing high temperature and inducing diuresis. Here, we characterized the complete chloroplast (cp) genome of E. cheiranthoides using genome skimming sequencing. The circular complete cp genome is 15...

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Autores principales: Zhang, Qingde, Du, Yingxue, Bai, Shangyuan, Yuan, Wangjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706721/
https://www.ncbi.nlm.nih.gov/pubmed/33365792
http://dx.doi.org/10.1080/23802359.2019.1660924
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author Zhang, Qingde
Du, Yingxue
Bai, Shangyuan
Yuan, Wangjun
author_facet Zhang, Qingde
Du, Yingxue
Bai, Shangyuan
Yuan, Wangjun
author_sort Zhang, Qingde
collection PubMed
description Erysimum cheiranthoides is commonly known as treacle-mustard or wormseed wallflower with value for reducing high temperature and inducing diuresis. Here, we characterized the complete chloroplast (cp) genome of E. cheiranthoides using genome skimming sequencing. The circular complete cp genome is 154,611 bp in length, containing a large single-copy (LSC) region of 83,809 bp, two copies of IR (26,475 bp each) regions, and a small single-copy (SSC) region of 17,852 bp. It comprises 113 unique genes, including 79 different protein-coding genes, 30 tRNA genes, and 4 rRNA genes with 19 duplicated genes in the IR regions. Phylogenetic analysis suggests that E. cheiranthoides is sister to Olimarabidopsis pumila with full support value in Brassicaceae.
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spelling pubmed-77067212020-12-22 Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides Zhang, Qingde Du, Yingxue Bai, Shangyuan Yuan, Wangjun Mitochondrial DNA B Resour Mitogenome Announcement Erysimum cheiranthoides is commonly known as treacle-mustard or wormseed wallflower with value for reducing high temperature and inducing diuresis. Here, we characterized the complete chloroplast (cp) genome of E. cheiranthoides using genome skimming sequencing. The circular complete cp genome is 154,611 bp in length, containing a large single-copy (LSC) region of 83,809 bp, two copies of IR (26,475 bp each) regions, and a small single-copy (SSC) region of 17,852 bp. It comprises 113 unique genes, including 79 different protein-coding genes, 30 tRNA genes, and 4 rRNA genes with 19 duplicated genes in the IR regions. Phylogenetic analysis suggests that E. cheiranthoides is sister to Olimarabidopsis pumila with full support value in Brassicaceae. Taylor & Francis 2019-09-06 /pmc/articles/PMC7706721/ /pubmed/33365792 http://dx.doi.org/10.1080/23802359.2019.1660924 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Qingde
Du, Yingxue
Bai, Shangyuan
Yuan, Wangjun
Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title_full Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title_fullStr Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title_full_unstemmed Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title_short Complete chloroplast genome sequence and phylogenetic analysis of Erysimum cheiranthoides
title_sort complete chloroplast genome sequence and phylogenetic analysis of erysimum cheiranthoides
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706721/
https://www.ncbi.nlm.nih.gov/pubmed/33365792
http://dx.doi.org/10.1080/23802359.2019.1660924
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