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The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae)
Quercus myrsinifolia Blume is an evergreen oak tree species native to East Asia, and is also one of the dominant trees of subtropical evergreen broad-leaved forests. In this study, we sequenced and analysed the complete chloroplast (cp) genome of the species. The circular genome is 160,803 bp in siz...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706793/ https://www.ncbi.nlm.nih.gov/pubmed/33365888 http://dx.doi.org/10.1080/23802359.2019.1667276 |
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author | Li, Yao Wang, Lu Fang, Yanming |
author_facet | Li, Yao Wang, Lu Fang, Yanming |
author_sort | Li, Yao |
collection | PubMed |
description | Quercus myrsinifolia Blume is an evergreen oak tree species native to East Asia, and is also one of the dominant trees of subtropical evergreen broad-leaved forests. In this study, we sequenced and analysed the complete chloroplast (cp) genome of the species. The circular genome is 160,803 bp in size, consisting of two copies of inverted repeat (IR) regions of 25,840 bp, one large single-copy (LSC) region of 90,223 bp, and one small single-copy (SSC) region of 18,900 bp. It encodes a total of 114 unique genes, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 30 cp genome sequences indicated that Q. myrsinifolia was among the members of section Cyclobalanopsis, and was most closely related to Q. sichourensis. |
format | Online Article Text |
id | pubmed-7706793 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77067932020-12-22 The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) Li, Yao Wang, Lu Fang, Yanming Mitochondrial DNA B Resour Mitogenome Announcement Quercus myrsinifolia Blume is an evergreen oak tree species native to East Asia, and is also one of the dominant trees of subtropical evergreen broad-leaved forests. In this study, we sequenced and analysed the complete chloroplast (cp) genome of the species. The circular genome is 160,803 bp in size, consisting of two copies of inverted repeat (IR) regions of 25,840 bp, one large single-copy (LSC) region of 90,223 bp, and one small single-copy (SSC) region of 18,900 bp. It encodes a total of 114 unique genes, including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on 30 cp genome sequences indicated that Q. myrsinifolia was among the members of section Cyclobalanopsis, and was most closely related to Q. sichourensis. Taylor & Francis 2019-09-20 /pmc/articles/PMC7706793/ /pubmed/33365888 http://dx.doi.org/10.1080/23802359.2019.1667276 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Li, Yao Wang, Lu Fang, Yanming The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title | The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title_full | The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title_fullStr | The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title_short | The complete chloroplast genome sequence of Quercus myrsinifolia (Fagaceae) |
title_sort | complete chloroplast genome sequence of quercus myrsinifolia (fagaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706793/ https://www.ncbi.nlm.nih.gov/pubmed/33365888 http://dx.doi.org/10.1080/23802359.2019.1667276 |
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