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Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)

Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data...

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Autores principales: Jiang, Kai, Wang, Zheng-Wei, Huang, Wei-Chang, Hu, Yong-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706839/
https://www.ncbi.nlm.nih.gov/pubmed/33365758
http://dx.doi.org/10.1080/23802359.2019.1660275
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author Jiang, Kai
Wang, Zheng-Wei
Huang, Wei-Chang
Hu, Yong-Hong
author_facet Jiang, Kai
Wang, Zheng-Wei
Huang, Wei-Chang
Hu, Yong-Hong
author_sort Jiang, Kai
collection PubMed
description Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data. The two complete chloroplasts of L. megaphylla are 152,741 bp in length, including two same length inverted repeats of 20,067 and 20,068 bp, a small single copy of 18,882 and 18,914 bp and a large single copy of 93,726 and 93,691 bp for LM01 and LM02 respectively. They all contain 84 protein-coding, 36 tRNA and eight rRNA genes. The phylogenetic analysis based on chloroplast genomes indicates that L. megaphylla is closely related to another Lindera and Litsea species.
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spelling pubmed-77068392020-12-22 Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) Jiang, Kai Wang, Zheng-Wei Huang, Wei-Chang Hu, Yong-Hong Mitochondrial DNA B Resour Mitogenome Announcement Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data. The two complete chloroplasts of L. megaphylla are 152,741 bp in length, including two same length inverted repeats of 20,067 and 20,068 bp, a small single copy of 18,882 and 18,914 bp and a large single copy of 93,726 and 93,691 bp for LM01 and LM02 respectively. They all contain 84 protein-coding, 36 tRNA and eight rRNA genes. The phylogenetic analysis based on chloroplast genomes indicates that L. megaphylla is closely related to another Lindera and Litsea species. Taylor & Francis 2019-09-09 /pmc/articles/PMC7706839/ /pubmed/33365758 http://dx.doi.org/10.1080/23802359.2019.1660275 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jiang, Kai
Wang, Zheng-Wei
Huang, Wei-Chang
Hu, Yong-Hong
Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title_full Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title_fullStr Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title_full_unstemmed Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title_short Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
title_sort characterization of two complete chloroplast genomes of lindera megaphylla (lauraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706839/
https://www.ncbi.nlm.nih.gov/pubmed/33365758
http://dx.doi.org/10.1080/23802359.2019.1660275
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