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Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae)
Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706839/ https://www.ncbi.nlm.nih.gov/pubmed/33365758 http://dx.doi.org/10.1080/23802359.2019.1660275 |
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author | Jiang, Kai Wang, Zheng-Wei Huang, Wei-Chang Hu, Yong-Hong |
author_facet | Jiang, Kai Wang, Zheng-Wei Huang, Wei-Chang Hu, Yong-Hong |
author_sort | Jiang, Kai |
collection | PubMed |
description | Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data. The two complete chloroplasts of L. megaphylla are 152,741 bp in length, including two same length inverted repeats of 20,067 and 20,068 bp, a small single copy of 18,882 and 18,914 bp and a large single copy of 93,726 and 93,691 bp for LM01 and LM02 respectively. They all contain 84 protein-coding, 36 tRNA and eight rRNA genes. The phylogenetic analysis based on chloroplast genomes indicates that L. megaphylla is closely related to another Lindera and Litsea species. |
format | Online Article Text |
id | pubmed-7706839 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77068392020-12-22 Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) Jiang, Kai Wang, Zheng-Wei Huang, Wei-Chang Hu, Yong-Hong Mitochondrial DNA B Resour Mitogenome Announcement Lindera megaphylla (Lauraceae) is an ecologically important and dominant evergreen broad-leaf tree species in the warm-temperate and subtropical zone of China. In this study, we sequenced and assembled two complete genomes of L. megaphylla (LM01 and LM02) based on the next-generation sequencing data. The two complete chloroplasts of L. megaphylla are 152,741 bp in length, including two same length inverted repeats of 20,067 and 20,068 bp, a small single copy of 18,882 and 18,914 bp and a large single copy of 93,726 and 93,691 bp for LM01 and LM02 respectively. They all contain 84 protein-coding, 36 tRNA and eight rRNA genes. The phylogenetic analysis based on chloroplast genomes indicates that L. megaphylla is closely related to another Lindera and Litsea species. Taylor & Francis 2019-09-09 /pmc/articles/PMC7706839/ /pubmed/33365758 http://dx.doi.org/10.1080/23802359.2019.1660275 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jiang, Kai Wang, Zheng-Wei Huang, Wei-Chang Hu, Yong-Hong Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title | Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title_full | Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title_fullStr | Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title_full_unstemmed | Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title_short | Characterization of two complete chloroplast genomes of Lindera megaphylla (Lauraceae) |
title_sort | characterization of two complete chloroplast genomes of lindera megaphylla (lauraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706839/ https://www.ncbi.nlm.nih.gov/pubmed/33365758 http://dx.doi.org/10.1080/23802359.2019.1660275 |
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