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The complete chloroplast genome sequence of Lycoris radiata
Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the anal...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706845/ https://www.ncbi.nlm.nih.gov/pubmed/33365775 http://dx.doi.org/10.1080/23802359.2019.1660265 |
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author | Zhang, Fengjiao Shu, Xiaochun Wang, Tao Zhuang, Weibing Wang, Zhong |
author_facet | Zhang, Fengjiao Shu, Xiaochun Wang, Tao Zhuang, Weibing Wang, Zhong |
author_sort | Zhang, Fengjiao |
collection | PubMed |
description | Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the analysis of genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 158,335 bp, composed of a large single-copy region (LSC) of 86,612 bp, a small single-copy region (SSC) of 18,261 bp, and a pair of inverted repeats (IR) of 26,731 bp. A total of 137 genes were annotated, including 87 protein-coding genes, 42 tRNA, and 8 rRNA genes. Phylogenetic tree analysis revealed that the close relationship between L. radiata and L. squamigera in the Amaryllidaceae family. |
format | Online Article Text |
id | pubmed-7706845 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77068452020-12-22 The complete chloroplast genome sequence of Lycoris radiata Zhang, Fengjiao Shu, Xiaochun Wang, Tao Zhuang, Weibing Wang, Zhong Mitochondrial DNA B Resour Mitogenome Announcement Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the analysis of genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 158,335 bp, composed of a large single-copy region (LSC) of 86,612 bp, a small single-copy region (SSC) of 18,261 bp, and a pair of inverted repeats (IR) of 26,731 bp. A total of 137 genes were annotated, including 87 protein-coding genes, 42 tRNA, and 8 rRNA genes. Phylogenetic tree analysis revealed that the close relationship between L. radiata and L. squamigera in the Amaryllidaceae family. Taylor & Francis 2019-09-10 /pmc/articles/PMC7706845/ /pubmed/33365775 http://dx.doi.org/10.1080/23802359.2019.1660265 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhang, Fengjiao Shu, Xiaochun Wang, Tao Zhuang, Weibing Wang, Zhong The complete chloroplast genome sequence of Lycoris radiata |
title | The complete chloroplast genome sequence of Lycoris radiata |
title_full | The complete chloroplast genome sequence of Lycoris radiata |
title_fullStr | The complete chloroplast genome sequence of Lycoris radiata |
title_full_unstemmed | The complete chloroplast genome sequence of Lycoris radiata |
title_short | The complete chloroplast genome sequence of Lycoris radiata |
title_sort | complete chloroplast genome sequence of lycoris radiata |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706845/ https://www.ncbi.nlm.nih.gov/pubmed/33365775 http://dx.doi.org/10.1080/23802359.2019.1660265 |
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