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The complete chloroplast genome sequence of Lycoris radiata

Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the anal...

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Detalles Bibliográficos
Autores principales: Zhang, Fengjiao, Shu, Xiaochun, Wang, Tao, Zhuang, Weibing, Wang, Zhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706845/
https://www.ncbi.nlm.nih.gov/pubmed/33365775
http://dx.doi.org/10.1080/23802359.2019.1660265
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author Zhang, Fengjiao
Shu, Xiaochun
Wang, Tao
Zhuang, Weibing
Wang, Zhong
author_facet Zhang, Fengjiao
Shu, Xiaochun
Wang, Tao
Zhuang, Weibing
Wang, Zhong
author_sort Zhang, Fengjiao
collection PubMed
description Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the analysis of genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 158,335 bp, composed of a large single-copy region (LSC) of 86,612 bp, a small single-copy region (SSC) of 18,261 bp, and a pair of inverted repeats (IR) of 26,731 bp. A total of 137 genes were annotated, including 87 protein-coding genes, 42 tRNA, and 8 rRNA genes. Phylogenetic tree analysis revealed that the close relationship between L. radiata and L. squamigera in the Amaryllidaceae family.
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spelling pubmed-77068452020-12-22 The complete chloroplast genome sequence of Lycoris radiata Zhang, Fengjiao Shu, Xiaochun Wang, Tao Zhuang, Weibing Wang, Zhong Mitochondrial DNA B Resour Mitogenome Announcement Lycoris radiata, widely known as red spider lily. It belongs to the Amaryllidaceae family and has highly ornamental and medical value. Here, we assembled the complete chloroplast genome sequence by high-throughput sequencing and bioinformatics, which will provide more genomic information to the analysis of genetic diversity and phylogenetic relationship. The full length of chloroplast genome is 158,335 bp, composed of a large single-copy region (LSC) of 86,612 bp, a small single-copy region (SSC) of 18,261 bp, and a pair of inverted repeats (IR) of 26,731 bp. A total of 137 genes were annotated, including 87 protein-coding genes, 42 tRNA, and 8 rRNA genes. Phylogenetic tree analysis revealed that the close relationship between L. radiata and L. squamigera in the Amaryllidaceae family. Taylor & Francis 2019-09-10 /pmc/articles/PMC7706845/ /pubmed/33365775 http://dx.doi.org/10.1080/23802359.2019.1660265 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Fengjiao
Shu, Xiaochun
Wang, Tao
Zhuang, Weibing
Wang, Zhong
The complete chloroplast genome sequence of Lycoris radiata
title The complete chloroplast genome sequence of Lycoris radiata
title_full The complete chloroplast genome sequence of Lycoris radiata
title_fullStr The complete chloroplast genome sequence of Lycoris radiata
title_full_unstemmed The complete chloroplast genome sequence of Lycoris radiata
title_short The complete chloroplast genome sequence of Lycoris radiata
title_sort complete chloroplast genome sequence of lycoris radiata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706845/
https://www.ncbi.nlm.nih.gov/pubmed/33365775
http://dx.doi.org/10.1080/23802359.2019.1660265
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