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Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China
Magnolia liliflora is commonly called lily magnolia and its buds are used as the herbal medicine; it is an endemic species to China. In this study, the complete chloroplast genome of M. liliflora has been presented and annotated. The whole chloroplast (cp) genome is 158,177 bp in size, which exhibit...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706850/ https://www.ncbi.nlm.nih.gov/pubmed/33365820 http://dx.doi.org/10.1080/23802359.2019.1664349 |
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author | Luo, Jiang Ruan, Tian Wan, Zhiping |
author_facet | Luo, Jiang Ruan, Tian Wan, Zhiping |
author_sort | Luo, Jiang |
collection | PubMed |
description | Magnolia liliflora is commonly called lily magnolia and its buds are used as the herbal medicine; it is an endemic species to China. In this study, the complete chloroplast genome of M. liliflora has been presented and annotated. The whole chloroplast (cp) genome is 158,177 bp in size, which exhibits a large single-copy region (LSC) of 88,134 bp, a small single-copy region (SSC) of 19,876 bp and two inverted-repeat regions (IRs) 25,706 bp in each one. The overall nucleotide composition is: 30.0% of A, 30.9% of T, 19.9% C, and 19.2% G, with the GC content of the chloroplast genome 39.1%. The cp genome of M. liliflora contains 129 genes, which includes 86 protein-coding genes (PCGs), 35 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). The maximum-likelihood (ML) tree result showed that M. liliflora is closely related to two Magnoliaceae family species of M. dealbata and M. glaucifolia in phylogenetic relationship. This complete chloroplast genomes will be useful for medicinal study in the future. |
format | Online Article Text |
id | pubmed-7706850 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77068502020-12-22 Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China Luo, Jiang Ruan, Tian Wan, Zhiping Mitochondrial DNA B Resour Mitogenome Announcement Magnolia liliflora is commonly called lily magnolia and its buds are used as the herbal medicine; it is an endemic species to China. In this study, the complete chloroplast genome of M. liliflora has been presented and annotated. The whole chloroplast (cp) genome is 158,177 bp in size, which exhibits a large single-copy region (LSC) of 88,134 bp, a small single-copy region (SSC) of 19,876 bp and two inverted-repeat regions (IRs) 25,706 bp in each one. The overall nucleotide composition is: 30.0% of A, 30.9% of T, 19.9% C, and 19.2% G, with the GC content of the chloroplast genome 39.1%. The cp genome of M. liliflora contains 129 genes, which includes 86 protein-coding genes (PCGs), 35 transfer RNA (tRNAs), and 8 ribosome RNA (rRNAs). The maximum-likelihood (ML) tree result showed that M. liliflora is closely related to two Magnoliaceae family species of M. dealbata and M. glaucifolia in phylogenetic relationship. This complete chloroplast genomes will be useful for medicinal study in the future. Taylor & Francis 2019-09-12 /pmc/articles/PMC7706850/ /pubmed/33365820 http://dx.doi.org/10.1080/23802359.2019.1664349 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Luo, Jiang Ruan, Tian Wan, Zhiping Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title | Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title_full | Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title_fullStr | Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title_full_unstemmed | Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title_short | Phylogenetic analysis of the chloroplast genome for Magnolia liliflora (Magnoliaceae), an endemic species to China |
title_sort | phylogenetic analysis of the chloroplast genome for magnolia liliflora (magnoliaceae), an endemic species to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706850/ https://www.ncbi.nlm.nih.gov/pubmed/33365820 http://dx.doi.org/10.1080/23802359.2019.1664349 |
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