Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis

The complete plastid genome of Corylopsis spicata was sequenced and analyzed in this study. It was found to be 159,507 bp and consisted of a large (88,243 bp) and small (18,716 bp) single-copy regions, separated by a pair of identical inverted repeats (26,274 bp). The GC content of the whole genome...

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Autores principales: Kim, Sang-Chul, Shin, Sookyung, Ahn, Ji-Young, Lee, Jei-Wan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706852/
https://www.ncbi.nlm.nih.gov/pubmed/33365690
http://dx.doi.org/10.1080/23802359.2019.1644223
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author Kim, Sang-Chul
Shin, Sookyung
Ahn, Ji-Young
Lee, Jei-Wan
author_facet Kim, Sang-Chul
Shin, Sookyung
Ahn, Ji-Young
Lee, Jei-Wan
author_sort Kim, Sang-Chul
collection PubMed
description The complete plastid genome of Corylopsis spicata was sequenced and analyzed in this study. It was found to be 159,507 bp and consisted of a large (88,243 bp) and small (18,716 bp) single-copy regions, separated by a pair of identical inverted repeats (26,274 bp). The GC content of the whole genome was 36.9%, and there were 85 unique protein-coding genes, 37 tRNA, and eight rRNA. The gene order and organization were consistent with those of other complete plastid genomes from the Hamamelidaceae. A phylogenetic tree was constructed based on 76 protein-coding genes that demonstrated a sister relationship within the genus Corylopsis.
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spelling pubmed-77068522020-12-22 Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis Kim, Sang-Chul Shin, Sookyung Ahn, Ji-Young Lee, Jei-Wan Mitochondrial DNA B Resour Mitogenome Announcement The complete plastid genome of Corylopsis spicata was sequenced and analyzed in this study. It was found to be 159,507 bp and consisted of a large (88,243 bp) and small (18,716 bp) single-copy regions, separated by a pair of identical inverted repeats (26,274 bp). The GC content of the whole genome was 36.9%, and there were 85 unique protein-coding genes, 37 tRNA, and eight rRNA. The gene order and organization were consistent with those of other complete plastid genomes from the Hamamelidaceae. A phylogenetic tree was constructed based on 76 protein-coding genes that demonstrated a sister relationship within the genus Corylopsis. Taylor & Francis 2019-07-23 /pmc/articles/PMC7706852/ /pubmed/33365690 http://dx.doi.org/10.1080/23802359.2019.1644223 Text en © 2019 National Institute of Forest Science of South Korea. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Kim, Sang-Chul
Shin, Sookyung
Ahn, Ji-Young
Lee, Jei-Wan
Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title_full Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title_fullStr Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title_full_unstemmed Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title_short Complete chloroplast genome of Corylopsis spicata and phylogenetic analysis
title_sort complete chloroplast genome of corylopsis spicata and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706852/
https://www.ncbi.nlm.nih.gov/pubmed/33365690
http://dx.doi.org/10.1080/23802359.2019.1644223
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