Complete chloroplast genome of ornamental orchids Eulophia flava

Eulophia flava (Lindl.) Hook.f. (Orchidaceae) is a high value ornamental plant especially for cutting flowers in China. In this paper, we reported and characterized the complete chloroplast genome sequence of E. flava by assembling from short reads generated by Illumina sequencing. Total chloroplast...

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Detalles Bibliográficos
Autores principales: Li, Haili, Li, Renmao, Zhang, Jianmin, Yin, Qianting, Zhang, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706861/
https://www.ncbi.nlm.nih.gov/pubmed/33365827
http://dx.doi.org/10.1080/23802359.2019.1664946
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author Li, Haili
Li, Renmao
Zhang, Jianmin
Yin, Qianting
Zhang, Ying
author_facet Li, Haili
Li, Renmao
Zhang, Jianmin
Yin, Qianting
Zhang, Ying
author_sort Li, Haili
collection PubMed
description Eulophia flava (Lindl.) Hook.f. (Orchidaceae) is a high value ornamental plant especially for cutting flowers in China. In this paper, we reported and characterized the complete chloroplast genome sequence of E. flava by assembling from short reads generated by Illumina sequencing. Total chloroplast genome size was 148,903 bp, including inverted repeats (IRs) of 26,651 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 84,465 and 13,132 bp, respectively. A total of 119 genes, including 36 tRNA, 8 rRNA, and 75 protein-coding genes, were identified. The GC content of E. flava is 36.8%. Phylogenetic analysis using the maximum-likelihood algorithm showed that E. flava is sister to a clade with one species in the genus Eulophia.
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spelling pubmed-77068612020-12-22 Complete chloroplast genome of ornamental orchids Eulophia flava Li, Haili Li, Renmao Zhang, Jianmin Yin, Qianting Zhang, Ying Mitochondrial DNA B Resour Mitogenome Announcement Eulophia flava (Lindl.) Hook.f. (Orchidaceae) is a high value ornamental plant especially for cutting flowers in China. In this paper, we reported and characterized the complete chloroplast genome sequence of E. flava by assembling from short reads generated by Illumina sequencing. Total chloroplast genome size was 148,903 bp, including inverted repeats (IRs) of 26,651 bp, separated by a large single copy (LSC) and a small single copy (SSC) of 84,465 and 13,132 bp, respectively. A total of 119 genes, including 36 tRNA, 8 rRNA, and 75 protein-coding genes, were identified. The GC content of E. flava is 36.8%. Phylogenetic analysis using the maximum-likelihood algorithm showed that E. flava is sister to a clade with one species in the genus Eulophia. Taylor & Francis 2019-09-13 /pmc/articles/PMC7706861/ /pubmed/33365827 http://dx.doi.org/10.1080/23802359.2019.1664946 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Haili
Li, Renmao
Zhang, Jianmin
Yin, Qianting
Zhang, Ying
Complete chloroplast genome of ornamental orchids Eulophia flava
title Complete chloroplast genome of ornamental orchids Eulophia flava
title_full Complete chloroplast genome of ornamental orchids Eulophia flava
title_fullStr Complete chloroplast genome of ornamental orchids Eulophia flava
title_full_unstemmed Complete chloroplast genome of ornamental orchids Eulophia flava
title_short Complete chloroplast genome of ornamental orchids Eulophia flava
title_sort complete chloroplast genome of ornamental orchids eulophia flava
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706861/
https://www.ncbi.nlm.nih.gov/pubmed/33365827
http://dx.doi.org/10.1080/23802359.2019.1664946
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