The complete chloroplast genome sequence of Salix viminalis (Salicaceae)

Here, the complete chloroplast (cp) genome of Salix viminalis was reported. The genome is 155,531 bp long, with a GC content of 36.71%, and contains four sub-regions: 84,395 bp of large single copy (LSC) and 16,218 bp of small single copy (SSC) regions, separated by 27,459 bp of inverted repeat (IR)...

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Autores principales: Hu, Hua-Lei, Lin, Hao, Chen, Xu-Hui, Liu, Yan-Qun, Qin, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706889/
https://www.ncbi.nlm.nih.gov/pubmed/33365844
http://dx.doi.org/10.1080/23802359.2019.1666041
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author Hu, Hua-Lei
Lin, Hao
Chen, Xu-Hui
Liu, Yan-Qun
Qin, Li
author_facet Hu, Hua-Lei
Lin, Hao
Chen, Xu-Hui
Liu, Yan-Qun
Qin, Li
author_sort Hu, Hua-Lei
collection PubMed
description Here, the complete chloroplast (cp) genome of Salix viminalis was reported. The genome is 155,531 bp long, with a GC content of 36.71%, and contains four sub-regions: 84,395 bp of large single copy (LSC) and 16,218 bp of small single copy (SSC) regions, separated by 27,459 bp of inverted repeat (IR) regions. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The Phylogenetic analyses based on the whole cp genome sequence placed S. viminalis into a clade containing Salix rehderiana, Salix taoensis, Salix koriyanagi, and Salix suchowensis. This is the first complete cp genome for S. viminalis that would be useful for phylogenetic and population genetic studies of this species.
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spelling pubmed-77068892020-12-22 The complete chloroplast genome sequence of Salix viminalis (Salicaceae) Hu, Hua-Lei Lin, Hao Chen, Xu-Hui Liu, Yan-Qun Qin, Li Mitochondrial DNA B Resour Mitogenome Announcement Here, the complete chloroplast (cp) genome of Salix viminalis was reported. The genome is 155,531 bp long, with a GC content of 36.71%, and contains four sub-regions: 84,395 bp of large single copy (LSC) and 16,218 bp of small single copy (SSC) regions, separated by 27,459 bp of inverted repeat (IR) regions. A total of 129 genes were annotated, including 83 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The Phylogenetic analyses based on the whole cp genome sequence placed S. viminalis into a clade containing Salix rehderiana, Salix taoensis, Salix koriyanagi, and Salix suchowensis. This is the first complete cp genome for S. viminalis that would be useful for phylogenetic and population genetic studies of this species. Taylor & Francis 2019-09-18 /pmc/articles/PMC7706889/ /pubmed/33365844 http://dx.doi.org/10.1080/23802359.2019.1666041 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Hu, Hua-Lei
Lin, Hao
Chen, Xu-Hui
Liu, Yan-Qun
Qin, Li
The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title_full The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title_fullStr The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title_full_unstemmed The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title_short The complete chloroplast genome sequence of Salix viminalis (Salicaceae)
title_sort complete chloroplast genome sequence of salix viminalis (salicaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706889/
https://www.ncbi.nlm.nih.gov/pubmed/33365844
http://dx.doi.org/10.1080/23802359.2019.1666041
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