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Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae
Osmanthus armatus (Oleaceae) is mainly distributed in the southwest of China and also planted in arboretums as an ornamental plant. In the present study, the plastome of O. armatus was reconstructed using genome skimming sequencing, and the phylogeny analysis was inferred based on whole plastome dat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706894/ https://www.ncbi.nlm.nih.gov/pubmed/33365865 http://dx.doi.org/10.1080/23802359.2019.1666686 |
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author | Du, Yingxue Li, Rui Zhang, Qingde |
author_facet | Du, Yingxue Li, Rui Zhang, Qingde |
author_sort | Du, Yingxue |
collection | PubMed |
description | Osmanthus armatus (Oleaceae) is mainly distributed in the southwest of China and also planted in arboretums as an ornamental plant. In the present study, the plastome of O. armatus was reconstructed using genome skimming sequencing, and the phylogeny analysis was inferred based on whole plastome data. The plastome of O. armatus is 155,259 bp in length, comprising two copies of inverted regions (IR, 25,680 bp) separated by the large single copy (LSC, 86,534 bp) and small single copy (SSC, 17,365 bp) regions. The genome encodes 114 unique genes, including 80 different protein-coding genes, 30 tRNA genes, and four rRNA genes, with 20 duplicated genes in the IR regions. Phylogenetic analysis suggests that the representative species from Osmanthus is monophyletic, and O. armatus is sister to O. fragrans within this genus. |
format | Online Article Text |
id | pubmed-7706894 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77068942020-12-22 Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae Du, Yingxue Li, Rui Zhang, Qingde Mitochondrial DNA B Resour Mitogenome Announcement Osmanthus armatus (Oleaceae) is mainly distributed in the southwest of China and also planted in arboretums as an ornamental plant. In the present study, the plastome of O. armatus was reconstructed using genome skimming sequencing, and the phylogeny analysis was inferred based on whole plastome data. The plastome of O. armatus is 155,259 bp in length, comprising two copies of inverted regions (IR, 25,680 bp) separated by the large single copy (LSC, 86,534 bp) and small single copy (SSC, 17,365 bp) regions. The genome encodes 114 unique genes, including 80 different protein-coding genes, 30 tRNA genes, and four rRNA genes, with 20 duplicated genes in the IR regions. Phylogenetic analysis suggests that the representative species from Osmanthus is monophyletic, and O. armatus is sister to O. fragrans within this genus. Taylor & Francis 2019-09-19 /pmc/articles/PMC7706894/ /pubmed/33365865 http://dx.doi.org/10.1080/23802359.2019.1666686 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Du, Yingxue Li, Rui Zhang, Qingde Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title | Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title_full | Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title_fullStr | Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title_full_unstemmed | Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title_short | Complete plastome sequence of Osmanthus armatus and phylogenetic implications in Oleaceae |
title_sort | complete plastome sequence of osmanthus armatus and phylogenetic implications in oleaceae |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706894/ https://www.ncbi.nlm.nih.gov/pubmed/33365865 http://dx.doi.org/10.1080/23802359.2019.1666686 |
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