The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)

The nearly complete sequence of the mitochondrial DNA of Calineuria stigmatica has been completed and annotated in this study. The circular genome is 15,070 bp in length with an A + T content of 61.8% and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (r...

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Autores principales: Cao, Jinjun, Wang, Ying, Zhang, Guoqiang, Yi, Shanqing, Li, Weihai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706896/
https://www.ncbi.nlm.nih.gov/pubmed/33365732
http://dx.doi.org/10.1080/23802359.2019.1659119
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author Cao, Jinjun
Wang, Ying
Zhang, Guoqiang
Yi, Shanqing
Li, Weihai
author_facet Cao, Jinjun
Wang, Ying
Zhang, Guoqiang
Yi, Shanqing
Li, Weihai
author_sort Cao, Jinjun
collection PubMed
description The nearly complete sequence of the mitochondrial DNA of Calineuria stigmatica has been completed and annotated in this study. The circular genome is 15,070 bp in length with an A + T content of 61.8% and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. The control region can only be assembled partially. All PCGs use normal start codon ATN, while COI, ND1, and ND5 use CCG, TTG, and GTG as start codon, respectively. Meanwhile, 10 PCGs use the typical termination codons TAN, except COII, ND4, ND5, which stopped with the incomplete terminaton signal T––. Based on 13 PCGs and two rRNAs using the Bayesian (BI) method supported that C. stigmatica was closely grouped with four other Acroneuriinae species. Our results provide basic data for further study of phylogeny in Plecoptera.
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spelling pubmed-77068962020-12-22 The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae) Cao, Jinjun Wang, Ying Zhang, Guoqiang Yi, Shanqing Li, Weihai Mitochondrial DNA B Resour Mitogenome Announcement The nearly complete sequence of the mitochondrial DNA of Calineuria stigmatica has been completed and annotated in this study. The circular genome is 15,070 bp in length with an A + T content of 61.8% and contains 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. The control region can only be assembled partially. All PCGs use normal start codon ATN, while COI, ND1, and ND5 use CCG, TTG, and GTG as start codon, respectively. Meanwhile, 10 PCGs use the typical termination codons TAN, except COII, ND4, ND5, which stopped with the incomplete terminaton signal T––. Based on 13 PCGs and two rRNAs using the Bayesian (BI) method supported that C. stigmatica was closely grouped with four other Acroneuriinae species. Our results provide basic data for further study of phylogeny in Plecoptera. Taylor & Francis 2019-09-02 /pmc/articles/PMC7706896/ /pubmed/33365732 http://dx.doi.org/10.1080/23802359.2019.1659119 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Cao, Jinjun
Wang, Ying
Zhang, Guoqiang
Yi, Shanqing
Li, Weihai
The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title_full The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title_fullStr The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title_full_unstemmed The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title_short The characterization of the mitochondrial genome of Calineuria stigmatica (Plecoptera: Perlidae)
title_sort characterization of the mitochondrial genome of calineuria stigmatica (plecoptera: perlidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706896/
https://www.ncbi.nlm.nih.gov/pubmed/33365732
http://dx.doi.org/10.1080/23802359.2019.1659119
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