The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list

The entire chloroplast genome of Aquilaria sinensis (Lour.) Gilg was identified as a circular molecule of 174,885 bp length with a typical tetrad structure, including a pair of inverted repeats (42,103 bp each), a large single copy (87,331 bp) and a small single copy (3,348 bp) regions. The A. sinen...

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Autores principales: Lin, Ching-Ping, Hsiao, Yuan-Ting, Hsiao, Yu-Jen Andy, Chou, Shu-Jen, Chen, Ai-Ping, Kuo, Ching-I, Chen, Long-Fang Oliver
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706903/
https://www.ncbi.nlm.nih.gov/pubmed/33365825
http://dx.doi.org/10.1080/23802359.2019.1664954
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author Lin, Ching-Ping
Hsiao, Yuan-Ting
Hsiao, Yu-Jen Andy
Chou, Shu-Jen
Chen, Ai-Ping
Kuo, Ching-I
Chen, Long-Fang Oliver
author_facet Lin, Ching-Ping
Hsiao, Yuan-Ting
Hsiao, Yu-Jen Andy
Chou, Shu-Jen
Chen, Ai-Ping
Kuo, Ching-I
Chen, Long-Fang Oliver
author_sort Lin, Ching-Ping
collection PubMed
description The entire chloroplast genome of Aquilaria sinensis (Lour.) Gilg was identified as a circular molecule of 174,885 bp length with a typical tetrad structure, including a pair of inverted repeats (42,103 bp each), a large single copy (87,331 bp) and a small single copy (3,348 bp) regions. The A. sinensis cp genome encoded 8 rRNAs, 39 tRNAs, and 90 proteins. A phylogenetic tree was reconstructed using the 43 protein-coding genes of eight Thymelaeaceae. Two other Malvales, Abelmoschus esculentus and Durio zibethinus, were selected as the outgroup. Our phylogenetic analysis suggests that the five examined species of Aquilaria appeared a monophyletic group with robust support.
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spelling pubmed-77069032020-12-22 The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list Lin, Ching-Ping Hsiao, Yuan-Ting Hsiao, Yu-Jen Andy Chou, Shu-Jen Chen, Ai-Ping Kuo, Ching-I Chen, Long-Fang Oliver Mitochondrial DNA B Resour Mitogenome Announcement The entire chloroplast genome of Aquilaria sinensis (Lour.) Gilg was identified as a circular molecule of 174,885 bp length with a typical tetrad structure, including a pair of inverted repeats (42,103 bp each), a large single copy (87,331 bp) and a small single copy (3,348 bp) regions. The A. sinensis cp genome encoded 8 rRNAs, 39 tRNAs, and 90 proteins. A phylogenetic tree was reconstructed using the 43 protein-coding genes of eight Thymelaeaceae. Two other Malvales, Abelmoschus esculentus and Durio zibethinus, were selected as the outgroup. Our phylogenetic analysis suggests that the five examined species of Aquilaria appeared a monophyletic group with robust support. Taylor & Francis 2019-09-13 /pmc/articles/PMC7706903/ /pubmed/33365825 http://dx.doi.org/10.1080/23802359.2019.1664954 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lin, Ching-Ping
Hsiao, Yuan-Ting
Hsiao, Yu-Jen Andy
Chou, Shu-Jen
Chen, Ai-Ping
Kuo, Ching-I
Chen, Long-Fang Oliver
The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title_full The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title_fullStr The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title_full_unstemmed The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title_short The complete chloroplast genome of agarwood producing species, Aquilaria sinensis (Lour.) Gilg: a species on IUCN red list
title_sort complete chloroplast genome of agarwood producing species, aquilaria sinensis (lour.) gilg: a species on iucn red list
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706903/
https://www.ncbi.nlm.nih.gov/pubmed/33365825
http://dx.doi.org/10.1080/23802359.2019.1664954
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