The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis

Torreya nucifera (L.) Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained...

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Autores principales: Shin, Sookyung, Kim, Sang-Chul, Hong, Kyung Nak, Kang, Hyesoon, Lee, Jei-Wan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706904/
https://www.ncbi.nlm.nih.gov/pubmed/33365615
http://dx.doi.org/10.1080/23802359.2019.1640091
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author Shin, Sookyung
Kim, Sang-Chul
Hong, Kyung Nak
Kang, Hyesoon
Lee, Jei-Wan
author_facet Shin, Sookyung
Kim, Sang-Chul
Hong, Kyung Nak
Kang, Hyesoon
Lee, Jei-Wan
author_sort Shin, Sookyung
collection PubMed
description Torreya nucifera (L.) Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained 118 genes, including 82 protein-coding genes, 33 tRNA genes, and 4 rRNA genes. Fifteen of the genes contained a single intron, whereas ycf3 contained two introns and there were no inverted repeat sequences in the genome. Phylogenetic analysis supported the monophyly of Torreya species within the Taxaceae and T. nucifera was closely related to its congener T. grandis.
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spelling pubmed-77069042020-12-22 The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis Shin, Sookyung Kim, Sang-Chul Hong, Kyung Nak Kang, Hyesoon Lee, Jei-Wan Mitochondrial DNA B Resour Mitogenome Announcement Torreya nucifera (L.) Siebold & Zucc. (Taxaceae) is a tertiary relict tree species with a distribution that is limited to South Korea and Japan. In the present study, the complete chloroplast (cp) genome of T. nucifera was sequenced and analyzed. The genome was 136,985 bp in length and contained 118 genes, including 82 protein-coding genes, 33 tRNA genes, and 4 rRNA genes. Fifteen of the genes contained a single intron, whereas ycf3 contained two introns and there were no inverted repeat sequences in the genome. Phylogenetic analysis supported the monophyly of Torreya species within the Taxaceae and T. nucifera was closely related to its congener T. grandis. Taylor & Francis 2019-07-18 /pmc/articles/PMC7706904/ /pubmed/33365615 http://dx.doi.org/10.1080/23802359.2019.1640091 Text en © 2019 National Institute of Forest Science of South Korea. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shin, Sookyung
Kim, Sang-Chul
Hong, Kyung Nak
Kang, Hyesoon
Lee, Jei-Wan
The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title_full The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title_fullStr The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title_short The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
title_sort complete chloroplast genome of torreya nucifera (taxaceae) and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706904/
https://www.ncbi.nlm.nih.gov/pubmed/33365615
http://dx.doi.org/10.1080/23802359.2019.1640091
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