Complete chloroplast genome sequence of Amomum villosum

The first complete chloroplast genome of Amomum villosum (Zingiberaceae) was reported in this study. The A. villosum genome was 163,608 bp in length, and comprised a pair of inverted repeat (IR) regions of 29,820 bp each, a large single-copy (LSC) region of 88,680 bp, and a small single-copy (SSC) r...

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Autores principales: Li, Dong-Mei, Zhao, Chao-Yi, Zhu, Gen-Fa, Xu, Ye-Chun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706907/
https://www.ncbi.nlm.nih.gov/pubmed/33365677
http://dx.doi.org/10.1080/23802359.2019.1644237
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author Li, Dong-Mei
Zhao, Chao-Yi
Zhu, Gen-Fa
Xu, Ye-Chun
author_facet Li, Dong-Mei
Zhao, Chao-Yi
Zhu, Gen-Fa
Xu, Ye-Chun
author_sort Li, Dong-Mei
collection PubMed
description The first complete chloroplast genome of Amomum villosum (Zingiberaceae) was reported in this study. The A. villosum genome was 163,608 bp in length, and comprised a pair of inverted repeat (IR) regions of 29,820 bp each, a large single-copy (LSC) region of 88,680 bp, and a small single-copy (SSC) region of 15,288 bp. It encoded 141 genes, including 87 protein-coding genes (79 PCG species), 46 tRNA genes (28 tRNA species), and 8 rRNA genes (4 rRNA species). The overall AT content was 63.92%. Phylogenetic analysis showed that A. villosum was closely related to two species Amomum kravanh and Amomum compactum within the genus Amomum in family Zingiberaceae.
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spelling pubmed-77069072020-12-22 Complete chloroplast genome sequence of Amomum villosum Li, Dong-Mei Zhao, Chao-Yi Zhu, Gen-Fa Xu, Ye-Chun Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome of Amomum villosum (Zingiberaceae) was reported in this study. The A. villosum genome was 163,608 bp in length, and comprised a pair of inverted repeat (IR) regions of 29,820 bp each, a large single-copy (LSC) region of 88,680 bp, and a small single-copy (SSC) region of 15,288 bp. It encoded 141 genes, including 87 protein-coding genes (79 PCG species), 46 tRNA genes (28 tRNA species), and 8 rRNA genes (4 rRNA species). The overall AT content was 63.92%. Phylogenetic analysis showed that A. villosum was closely related to two species Amomum kravanh and Amomum compactum within the genus Amomum in family Zingiberaceae. Taylor & Francis 2019-07-22 /pmc/articles/PMC7706907/ /pubmed/33365677 http://dx.doi.org/10.1080/23802359.2019.1644237 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Dong-Mei
Zhao, Chao-Yi
Zhu, Gen-Fa
Xu, Ye-Chun
Complete chloroplast genome sequence of Amomum villosum
title Complete chloroplast genome sequence of Amomum villosum
title_full Complete chloroplast genome sequence of Amomum villosum
title_fullStr Complete chloroplast genome sequence of Amomum villosum
title_full_unstemmed Complete chloroplast genome sequence of Amomum villosum
title_short Complete chloroplast genome sequence of Amomum villosum
title_sort complete chloroplast genome sequence of amomum villosum
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706907/
https://www.ncbi.nlm.nih.gov/pubmed/33365677
http://dx.doi.org/10.1080/23802359.2019.1644237
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