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The complete chloroplast genome sequence of Dendrocalamus sinicus
Dendrocalamus sinicus is the world’s largest bamboo species. In this study, the complete chloroplast genome (cpDNA) sequence of D. sinicus was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 139,441 bp in length, contains a large single-copy region (LSC) of 82,777 bp and a smal...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706990/ https://www.ncbi.nlm.nih.gov/pubmed/33365823 http://dx.doi.org/10.1080/23802359.2019.1664947 |
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author | Wang, Yi Yuan, Xiaolong Li, Yunqing Zhang, Jinfeng |
author_facet | Wang, Yi Yuan, Xiaolong Li, Yunqing Zhang, Jinfeng |
author_sort | Wang, Yi |
collection | PubMed |
description | Dendrocalamus sinicus is the world’s largest bamboo species. In this study, the complete chloroplast genome (cpDNA) sequence of D. sinicus was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 139,441 bp in length, contains a large single-copy region (LSC) of 82,777 bp and a small single-copy region (SSC) of 12,803 bp, which were separated by a pair of inverted repeat (IR) regions of 21,296 bp. The genome contains 136 genes, including 89 protein-coding genes, 8 ribosomal RNA genes, and 40 transfer RNA genes. The overall GC content of the whole genome is 38.9%, and the corresponding values of the LSC, SSC, and IR regions are 37%, 33.2%, and 44.2%, respectively. Further, phylogenomic analysis showed that D. sinicus clustered together with D. latiflorus. |
format | Online Article Text |
id | pubmed-7706990 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77069902020-12-22 The complete chloroplast genome sequence of Dendrocalamus sinicus Wang, Yi Yuan, Xiaolong Li, Yunqing Zhang, Jinfeng Mitochondrial DNA B Resour Mitogenome Announcement Dendrocalamus sinicus is the world’s largest bamboo species. In this study, the complete chloroplast genome (cpDNA) sequence of D. sinicus was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 139,441 bp in length, contains a large single-copy region (LSC) of 82,777 bp and a small single-copy region (SSC) of 12,803 bp, which were separated by a pair of inverted repeat (IR) regions of 21,296 bp. The genome contains 136 genes, including 89 protein-coding genes, 8 ribosomal RNA genes, and 40 transfer RNA genes. The overall GC content of the whole genome is 38.9%, and the corresponding values of the LSC, SSC, and IR regions are 37%, 33.2%, and 44.2%, respectively. Further, phylogenomic analysis showed that D. sinicus clustered together with D. latiflorus. Taylor & Francis 2019-09-12 /pmc/articles/PMC7706990/ /pubmed/33365823 http://dx.doi.org/10.1080/23802359.2019.1664947 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yi Yuan, Xiaolong Li, Yunqing Zhang, Jinfeng The complete chloroplast genome sequence of Dendrocalamus sinicus |
title | The complete chloroplast genome sequence of Dendrocalamus sinicus |
title_full | The complete chloroplast genome sequence of Dendrocalamus sinicus |
title_fullStr | The complete chloroplast genome sequence of Dendrocalamus sinicus |
title_full_unstemmed | The complete chloroplast genome sequence of Dendrocalamus sinicus |
title_short | The complete chloroplast genome sequence of Dendrocalamus sinicus |
title_sort | complete chloroplast genome sequence of dendrocalamus sinicus |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7706990/ https://www.ncbi.nlm.nih.gov/pubmed/33365823 http://dx.doi.org/10.1080/23802359.2019.1664947 |
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