The complete chloroplast genome sequence of Spathodea campanulata

The first complete chloroplast genome (cpDNA) sequence of Spathodea campanulata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 158,001 bp in length, contains a large single-copy region (LSC) of 84,923 bp and a small single-copy region (SSC) of 12,566 bp, whic...

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Detalles Bibliográficos
Autores principales: Wang, Yi, Yuan, Xiaolong, Li, Yunqing, Zhang, Jinfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707184/
https://www.ncbi.nlm.nih.gov/pubmed/33366043
http://dx.doi.org/10.1080/23802359.2019.1674710
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author Wang, Yi
Yuan, Xiaolong
Li, Yunqing
Zhang, Jinfeng
author_facet Wang, Yi
Yuan, Xiaolong
Li, Yunqing
Zhang, Jinfeng
author_sort Wang, Yi
collection PubMed
description The first complete chloroplast genome (cpDNA) sequence of Spathodea campanulata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 158,001 bp in length, contains a large single-copy region (LSC) of 84,923 bp and a small single-copy region (SSC) of 12,566 bp, which were separated by a pair of inverted repeat (IR) regions of 30,256 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.8% and the corresponding values of the LSC, SSC, and IR regions are 35.9, 32.6, and 41.7%, respectively. Further, phylogenomic analysis showed that S. campanulata clustered in a unique clade in family Bignoniaceae.
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spelling pubmed-77071842020-12-22 The complete chloroplast genome sequence of Spathodea campanulata Wang, Yi Yuan, Xiaolong Li, Yunqing Zhang, Jinfeng Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome (cpDNA) sequence of Spathodea campanulata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 158,001 bp in length, contains a large single-copy region (LSC) of 84,923 bp and a small single-copy region (SSC) of 12,566 bp, which were separated by a pair of inverted repeat (IR) regions of 30,256 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.8% and the corresponding values of the LSC, SSC, and IR regions are 35.9, 32.6, and 41.7%, respectively. Further, phylogenomic analysis showed that S. campanulata clustered in a unique clade in family Bignoniaceae. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707184/ /pubmed/33366043 http://dx.doi.org/10.1080/23802359.2019.1674710 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Yi
Yuan, Xiaolong
Li, Yunqing
Zhang, Jinfeng
The complete chloroplast genome sequence of Spathodea campanulata
title The complete chloroplast genome sequence of Spathodea campanulata
title_full The complete chloroplast genome sequence of Spathodea campanulata
title_fullStr The complete chloroplast genome sequence of Spathodea campanulata
title_full_unstemmed The complete chloroplast genome sequence of Spathodea campanulata
title_short The complete chloroplast genome sequence of Spathodea campanulata
title_sort complete chloroplast genome sequence of spathodea campanulata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707184/
https://www.ncbi.nlm.nih.gov/pubmed/33366043
http://dx.doi.org/10.1080/23802359.2019.1674710
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