Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China

Fritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy...

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Autores principales: Che, Peng, Wei, Xueping, Song, Yichen, Zhang, Bengang, Liu, Haitao, Qi, Yaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707188/
https://www.ncbi.nlm.nih.gov/pubmed/33366054
http://dx.doi.org/10.1080/23802359.2019.1674742
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author Che, Peng
Wei, Xueping
Song, Yichen
Zhang, Bengang
Liu, Haitao
Qi, Yaodong
author_facet Che, Peng
Wei, Xueping
Song, Yichen
Zhang, Bengang
Liu, Haitao
Qi, Yaodong
author_sort Che, Peng
collection PubMed
description Fritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy (LSC) region of 81,757 bp and one small single-copy (SSC) region of 17,537 bp and separated by a pair of inverted repeat (IR) regions of 26,322 bp. A total of 112 unique genes (78 protein-coding, 30 tRNA, and 4 rRNA) are predicted and 19 of them are duplicated in IR regions. The overall GC content is 37.0% while the GC content of the LSC, SSC, and IR regions are 34.8, 30.5, and 42.5%, separately. Phylogenetic analysis indicated that F. delavayi was closely related to F. cirrhosa.
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spelling pubmed-77071882020-12-22 Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China Che, Peng Wei, Xueping Song, Yichen Zhang, Bengang Liu, Haitao Qi, Yaodong Mitochondrial DNA B Resour Mitogenome Announcement Fritillaria delavayi has been widely used as a traditional Chinese medicine (TCM) to treat respiratory diseases for thousands of years. In this study, the complete chloroplast genome of F. delavayi was assembled. The circular genome is 151,938 bp in size, which is comprised of one large single-copy (LSC) region of 81,757 bp and one small single-copy (SSC) region of 17,537 bp and separated by a pair of inverted repeat (IR) regions of 26,322 bp. A total of 112 unique genes (78 protein-coding, 30 tRNA, and 4 rRNA) are predicted and 19 of them are duplicated in IR regions. The overall GC content is 37.0% while the GC content of the LSC, SSC, and IR regions are 34.8, 30.5, and 42.5%, separately. Phylogenetic analysis indicated that F. delavayi was closely related to F. cirrhosa. Taylor & Francis 2019-10-10 /pmc/articles/PMC7707188/ /pubmed/33366054 http://dx.doi.org/10.1080/23802359.2019.1674742 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Che, Peng
Wei, Xueping
Song, Yichen
Zhang, Bengang
Liu, Haitao
Qi, Yaodong
Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title_full Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title_fullStr Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title_short Characterization of the complete chloroplast genome sequence of Fritillaria delavayi, an ethnomedicinal plant in China
title_sort characterization of the complete chloroplast genome sequence of fritillaria delavayi, an ethnomedicinal plant in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707188/
https://www.ncbi.nlm.nih.gov/pubmed/33366054
http://dx.doi.org/10.1080/23802359.2019.1674742
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