The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae

Cinnamomum pittosporoides is an important timber plant endemic to southwest of China. In the present study, we sequenced the complete chloroplast genome of C. pittosporoides and used the data to reveal the species phylogenetic in Lauraceae. The complete chloroplast genome showed a circular genome of...

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Autores principales: Zhou, Xiong-Li, Zhang, Li-Qin, Yang, Liu, Huang, Feng, Wang, Yue-Hua, Huang, Xing, Deng, Gang, Shen, Shi-Kang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707191/
https://www.ncbi.nlm.nih.gov/pubmed/33365939
http://dx.doi.org/10.1080/23802359.2019.1669503
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author Zhou, Xiong-Li
Zhang, Li-Qin
Yang, Liu
Huang, Feng
Wang, Yue-Hua
Huang, Xing
Deng, Gang
Shen, Shi-Kang
author_facet Zhou, Xiong-Li
Zhang, Li-Qin
Yang, Liu
Huang, Feng
Wang, Yue-Hua
Huang, Xing
Deng, Gang
Shen, Shi-Kang
author_sort Zhou, Xiong-Li
collection PubMed
description Cinnamomum pittosporoides is an important timber plant endemic to southwest of China. In the present study, we sequenced the complete chloroplast genome of C. pittosporoides and used the data to reveal the species phylogenetic in Lauraceae. The complete chloroplast genome showed a circular genome of 152,730 bp size with 39.2% GC content. The genome is of typical structure and contains a pair of inverted repeat (IR) regions with 20,074 bp, separated by one large single-copy (LSC) with 93,722 bp and one small single-copy (SSC) regions with 18,860 bp. The genome contained 116 genes, including 82 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. A phylogenetic tree reconstructed based on 26 chloroplast genomes reveals that C. pittosporoides is most related with C. chago in Lauraceae.
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spelling pubmed-77071912020-12-22 The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae Zhou, Xiong-Li Zhang, Li-Qin Yang, Liu Huang, Feng Wang, Yue-Hua Huang, Xing Deng, Gang Shen, Shi-Kang Mitochondrial DNA B Resour Mitogenome Announcement Cinnamomum pittosporoides is an important timber plant endemic to southwest of China. In the present study, we sequenced the complete chloroplast genome of C. pittosporoides and used the data to reveal the species phylogenetic in Lauraceae. The complete chloroplast genome showed a circular genome of 152,730 bp size with 39.2% GC content. The genome is of typical structure and contains a pair of inverted repeat (IR) regions with 20,074 bp, separated by one large single-copy (LSC) with 93,722 bp and one small single-copy (SSC) regions with 18,860 bp. The genome contained 116 genes, including 82 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. A phylogenetic tree reconstructed based on 26 chloroplast genomes reveals that C. pittosporoides is most related with C. chago in Lauraceae. Taylor & Francis 2019-09-25 /pmc/articles/PMC7707191/ /pubmed/33365939 http://dx.doi.org/10.1080/23802359.2019.1669503 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhou, Xiong-Li
Zhang, Li-Qin
Yang, Liu
Huang, Feng
Wang, Yue-Hua
Huang, Xing
Deng, Gang
Shen, Shi-Kang
The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title_full The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title_fullStr The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title_full_unstemmed The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title_short The complete chloroplast genome of Cinnamomum pittosporoides reveals its phylogenetic relationship in Lauraceae
title_sort complete chloroplast genome of cinnamomum pittosporoides reveals its phylogenetic relationship in lauraceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707191/
https://www.ncbi.nlm.nih.gov/pubmed/33365939
http://dx.doi.org/10.1080/23802359.2019.1669503
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