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The complete chloroplast genome sequence of Ziziphus incurva
The first complete chloroplast genome sequences of Ziziphus incurva were reported in this study. The complete chloroplast genome (cpDNA) sequence of Z. incurva was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 160,920 bp in length, contains a large single-copy region (LSC) of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707192/ https://www.ncbi.nlm.nih.gov/pubmed/33366041 http://dx.doi.org/10.1080/23802359.2019.1674706 |
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author | Wang, Yi Hao, Jiabo Yuan, Xiaolong Lu, Bin |
author_facet | Wang, Yi Hao, Jiabo Yuan, Xiaolong Lu, Bin |
author_sort | Wang, Yi |
collection | PubMed |
description | The first complete chloroplast genome sequences of Ziziphus incurva were reported in this study. The complete chloroplast genome (cpDNA) sequence of Z. incurva was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 160,920 bp in length, contains a large single-copy region (LSC) of 88,778 bp and a small single-copy region (SSC) of 19,172 bp, which were separated by a pair of inverted repeat (IR) regions of 26,477 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.8% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.8, and 42.7%, respectively. Further, the phylogenomic analysis showed that Z. incurva clustered together with Z. jujube, Z. mauritiana, and Z. spina-christi. |
format | Online Article Text |
id | pubmed-7707192 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77071922020-12-22 The complete chloroplast genome sequence of Ziziphus incurva Wang, Yi Hao, Jiabo Yuan, Xiaolong Lu, Bin Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome sequences of Ziziphus incurva were reported in this study. The complete chloroplast genome (cpDNA) sequence of Z. incurva was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 160,920 bp in length, contains a large single-copy region (LSC) of 88,778 bp and a small single-copy region (SSC) of 19,172 bp, which were separated by a pair of inverted repeat (IR) regions of 26,477 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.8% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.8, and 42.7%, respectively. Further, the phylogenomic analysis showed that Z. incurva clustered together with Z. jujube, Z. mauritiana, and Z. spina-christi. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707192/ /pubmed/33366041 http://dx.doi.org/10.1080/23802359.2019.1674706 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yi Hao, Jiabo Yuan, Xiaolong Lu, Bin The complete chloroplast genome sequence of Ziziphus incurva |
title | The complete chloroplast genome sequence of Ziziphus incurva |
title_full | The complete chloroplast genome sequence of Ziziphus incurva |
title_fullStr | The complete chloroplast genome sequence of Ziziphus incurva |
title_full_unstemmed | The complete chloroplast genome sequence of Ziziphus incurva |
title_short | The complete chloroplast genome sequence of Ziziphus incurva |
title_sort | complete chloroplast genome sequence of ziziphus incurva |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707192/ https://www.ncbi.nlm.nih.gov/pubmed/33366041 http://dx.doi.org/10.1080/23802359.2019.1674706 |
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