Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships

In this study, we reported the complete chloroplast genome of Fortunella crassifolia Swingle using the HiSeq-4000 sequencing. The chloroplast genome size is 160,229 bp, which consists of a large single-copy region (87,774 bp), a small single-copy region (18,721 bp), and a pair of IR regions (26,867 ...

Descripción completa

Detalles Bibliográficos
Autores principales: Wu, Jun-Wei, Liu, Fan, Tian, Na, Liu, Jia-Peng, Shi, Xiao-Bao, Bei, Xue-Jun, Cheng, Chun-Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707195/
https://www.ncbi.nlm.nih.gov/pubmed/33366075
http://dx.doi.org/10.1080/23802359.2019.1675554
_version_ 1783617293214810112
author Wu, Jun-Wei
Liu, Fan
Tian, Na
Liu, Jia-Peng
Shi, Xiao-Bao
Bei, Xue-Jun
Cheng, Chun-Zhen
author_facet Wu, Jun-Wei
Liu, Fan
Tian, Na
Liu, Jia-Peng
Shi, Xiao-Bao
Bei, Xue-Jun
Cheng, Chun-Zhen
author_sort Wu, Jun-Wei
collection PubMed
description In this study, we reported the complete chloroplast genome of Fortunella crassifolia Swingle using the HiSeq-4000 sequencing. The chloroplast genome size is 160,229 bp, which consists of a large single-copy region (87,774 bp), a small single-copy region (18,721 bp), and a pair of IR regions (26,867 bp). The chloroplast genome contains 114 unique genes, including 80 protein-coding genes, 30 tRNAs, and 4 rRNAs. Phylogenetic maximum likelihood analysis showed that F. crassifolia was closest to Hongkong kumquat (F. hindsii). The complete chloroplast genome would be subsequently used for citrus species researches.
format Online
Article
Text
id pubmed-7707195
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77071952020-12-22 Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships Wu, Jun-Wei Liu, Fan Tian, Na Liu, Jia-Peng Shi, Xiao-Bao Bei, Xue-Jun Cheng, Chun-Zhen Mitochondrial DNA B Resour Mitogenome Announcement In this study, we reported the complete chloroplast genome of Fortunella crassifolia Swingle using the HiSeq-4000 sequencing. The chloroplast genome size is 160,229 bp, which consists of a large single-copy region (87,774 bp), a small single-copy region (18,721 bp), and a pair of IR regions (26,867 bp). The chloroplast genome contains 114 unique genes, including 80 protein-coding genes, 30 tRNAs, and 4 rRNAs. Phylogenetic maximum likelihood analysis showed that F. crassifolia was closest to Hongkong kumquat (F. hindsii). The complete chloroplast genome would be subsequently used for citrus species researches. Taylor & Francis 2019-10-12 /pmc/articles/PMC7707195/ /pubmed/33366075 http://dx.doi.org/10.1080/23802359.2019.1675554 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wu, Jun-Wei
Liu, Fan
Tian, Na
Liu, Jia-Peng
Shi, Xiao-Bao
Bei, Xue-Jun
Cheng, Chun-Zhen
Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title_full Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title_fullStr Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title_full_unstemmed Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title_short Characterisation of the complete chloroplast genome of Fortunella Crassifolia Swingle and phylogenetic relationships
title_sort characterisation of the complete chloroplast genome of fortunella crassifolia swingle and phylogenetic relationships
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707195/
https://www.ncbi.nlm.nih.gov/pubmed/33366075
http://dx.doi.org/10.1080/23802359.2019.1675554
work_keys_str_mv AT wujunwei characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT liufan characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT tianna characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT liujiapeng characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT shixiaobao characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT beixuejun characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships
AT chengchunzhen characterisationofthecompletechloroplastgenomeoffortunellacrassifoliaswingleandphylogeneticrelationships

Ejemplares similares