The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)

The whole chloroplast genome of Clintonia udensis, an import Chinese medicinal herb, was determined by Illumina sequencing data in this study. The cp genome is 153,160 bp in length, with a large single-copy region (LSC) of 83,901 bp, a small single-copy region (SSC) of 17,241 bp and a pair of invert...

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Autores principales: Li, Jianfang, Xu, Bei, Yang, Qian, Liu, Zhan-Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707202/
https://www.ncbi.nlm.nih.gov/pubmed/33365915
http://dx.doi.org/10.1080/23802359.2019.1668735
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author Li, Jianfang
Xu, Bei
Yang, Qian
Liu, Zhan-Lin
author_facet Li, Jianfang
Xu, Bei
Yang, Qian
Liu, Zhan-Lin
author_sort Li, Jianfang
collection PubMed
description The whole chloroplast genome of Clintonia udensis, an import Chinese medicinal herb, was determined by Illumina sequencing data in this study. The cp genome is 153,160 bp in length, with a large single-copy region (LSC) of 83,901 bp, a small single-copy region (SSC) of 17,241 bp and a pair of inverted repeat regions (IRs) of 26,009 bp. It contains 132 genes, including 83 protein-coding genes, 36 tRNA genes, 8 rRNA genes, and 5 pseudogenes. The overall GC content was 37.3%, while the corresponding values in the LSC, SSC and IR region are 35.1, 31.0, and 42.8%, respectively. Phylogenetic analysis indicated that Clintonia udensis was related to Lilioideae species in Liliaceae.
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spelling pubmed-77072022020-12-22 The complete chloroplast genome sequence of Clintonia udensis (Liliaceae) Li, Jianfang Xu, Bei Yang, Qian Liu, Zhan-Lin Mitochondrial DNA B Resour Mitogenome Announcement The whole chloroplast genome of Clintonia udensis, an import Chinese medicinal herb, was determined by Illumina sequencing data in this study. The cp genome is 153,160 bp in length, with a large single-copy region (LSC) of 83,901 bp, a small single-copy region (SSC) of 17,241 bp and a pair of inverted repeat regions (IRs) of 26,009 bp. It contains 132 genes, including 83 protein-coding genes, 36 tRNA genes, 8 rRNA genes, and 5 pseudogenes. The overall GC content was 37.3%, while the corresponding values in the LSC, SSC and IR region are 35.1, 31.0, and 42.8%, respectively. Phylogenetic analysis indicated that Clintonia udensis was related to Lilioideae species in Liliaceae. Taylor & Francis 2019-09-23 /pmc/articles/PMC7707202/ /pubmed/33365915 http://dx.doi.org/10.1080/23802359.2019.1668735 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Jianfang
Xu, Bei
Yang, Qian
Liu, Zhan-Lin
The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title_full The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title_fullStr The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title_full_unstemmed The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title_short The complete chloroplast genome sequence of Clintonia udensis (Liliaceae)
title_sort complete chloroplast genome sequence of clintonia udensis (liliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707202/
https://www.ncbi.nlm.nih.gov/pubmed/33365915
http://dx.doi.org/10.1080/23802359.2019.1668735
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