The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）

Goodyera foliosa is a terrestrial orchid in Asia and has been listed as an endangered species in the Red List. In this study, we assembled the complete chloroplast genome of G. foliosa using Illumina sequencing data. Its full-length of 154,008 bp including a pair of invert repeats (IR) regions of 25...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Jie, Xie, Tai-Xiang, Ma, Shan-Hu, Chen, Ming-Kun, Zheng, Qing-Dong, Ai, Ye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707215/
https://www.ncbi.nlm.nih.gov/pubmed/33366047
http://dx.doi.org/10.1080/23802359.2019.1674728
_version_ 1783617296997023744
author Zhou, Jie
Xie, Tai-Xiang
Ma, Shan-Hu
Chen, Ming-Kun
Zheng, Qing-Dong
Ai, Ye
author_facet Zhou, Jie
Xie, Tai-Xiang
Ma, Shan-Hu
Chen, Ming-Kun
Zheng, Qing-Dong
Ai, Ye
author_sort Zhou, Jie
collection PubMed
description Goodyera foliosa is a terrestrial orchid in Asia and has been listed as an endangered species in the Red List. In this study, we assembled the complete chloroplast genome of G. foliosa using Illumina sequencing data. Its full-length of 154,008 bp including a pair of invert repeats (IR) regions of 25,045 bp, large single-copy (LSC) region of 83,248 bp, and small single-copy (SSC) region of 20,670 bp. The chloroplast genome contains 127 genes, including 80 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. In addition, the phylogenetic analysis base on 12 chloroplast genomes of Orchidaceae indicates that G. schlechtendaliana is closely related to G. foliosa. Our study would be helpful for the formulation of conservation strategies and further research of G. foliosa.
format Online
Article
Text
id pubmed-7707215
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77072152020-12-22 The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae） Zhou, Jie Xie, Tai-Xiang Ma, Shan-Hu Chen, Ming-Kun Zheng, Qing-Dong Ai, Ye Mitochondrial DNA B Resour Mitogenome Announcement Goodyera foliosa is a terrestrial orchid in Asia and has been listed as an endangered species in the Red List. In this study, we assembled the complete chloroplast genome of G. foliosa using Illumina sequencing data. Its full-length of 154,008 bp including a pair of invert repeats (IR) regions of 25,045 bp, large single-copy (LSC) region of 83,248 bp, and small single-copy (SSC) region of 20,670 bp. The chloroplast genome contains 127 genes, including 80 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. In addition, the phylogenetic analysis base on 12 chloroplast genomes of Orchidaceae indicates that G. schlechtendaliana is closely related to G. foliosa. Our study would be helpful for the formulation of conservation strategies and further research of G. foliosa. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707215/ /pubmed/33366047 http://dx.doi.org/10.1080/23802359.2019.1674728 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhou, Jie
Xie, Tai-Xiang
Ma, Shan-Hu
Chen, Ming-Kun
Zheng, Qing-Dong
Ai, Ye
The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title_full The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title_fullStr The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title_full_unstemmed The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title_short The complete chloroplast genome sequence of Goodyera foliosa（Orchidaceae）
title_sort complete chloroplast genome sequence of goodyera foliosa（orchidaceae）
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707215/
https://www.ncbi.nlm.nih.gov/pubmed/33366047
http://dx.doi.org/10.1080/23802359.2019.1674728
work_keys_str_mv AT zhoujie thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT xietaixiang thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT mashanhu thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT chenmingkun thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT zhengqingdong thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT aiye thecompletechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT zhoujie completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT xietaixiang completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT mashanhu completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT chenmingkun completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT zhengqingdong completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae
AT aiye completechloroplastgenomesequenceofgoodyerafoliosaorchidaceae

Ejemplares similares