Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea

We report the chloroplast genome sequence of Nanofrustulum shiloi, a tiny araphid pennate diatom collected from the Adriatic Sea. The 160,994-bp N. shiloi genome displays a quadripartite structure and its gene repertoire resembles those of other diatom chloroplast genomes. Besides the genes located...

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Autores principales: Li, Chunlian, Gastineau, Romain, Turmel, Monique, Witkowski, Andrzej, Otis, Christian, Car, Ana, Lemieux, Claude
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707228/
https://www.ncbi.nlm.nih.gov/pubmed/33366000
http://dx.doi.org/10.1080/23802359.2019.1673245
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author Li, Chunlian
Gastineau, Romain
Turmel, Monique
Witkowski, Andrzej
Otis, Christian
Car, Ana
Lemieux, Claude
author_facet Li, Chunlian
Gastineau, Romain
Turmel, Monique
Witkowski, Andrzej
Otis, Christian
Car, Ana
Lemieux, Claude
author_sort Li, Chunlian
collection PubMed
description We report the chloroplast genome sequence of Nanofrustulum shiloi, a tiny araphid pennate diatom collected from the Adriatic Sea. The 160,994-bp N. shiloi genome displays a quadripartite structure and its gene repertoire resembles those of other diatom chloroplast genomes. Besides the genes located in the inverted repeat, psbY is duplicated. A gene-poor region in the large single-copy region contains multiple ORFs sharing sequence similarities with plasmids and chloroplast ORFs found in other diatom species. The genome features a single intron, a group II intron in petB. Phylogenomic analysis identified N. shiloi at a basal position within the araphid 2 clade.
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spelling pubmed-77072282020-12-22 Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea Li, Chunlian Gastineau, Romain Turmel, Monique Witkowski, Andrzej Otis, Christian Car, Ana Lemieux, Claude Mitochondrial DNA B Resour Mitogenome Announcement We report the chloroplast genome sequence of Nanofrustulum shiloi, a tiny araphid pennate diatom collected from the Adriatic Sea. The 160,994-bp N. shiloi genome displays a quadripartite structure and its gene repertoire resembles those of other diatom chloroplast genomes. Besides the genes located in the inverted repeat, psbY is duplicated. A gene-poor region in the large single-copy region contains multiple ORFs sharing sequence similarities with plasmids and chloroplast ORFs found in other diatom species. The genome features a single intron, a group II intron in petB. Phylogenomic analysis identified N. shiloi at a basal position within the araphid 2 clade. Taylor & Francis 2019-10-04 /pmc/articles/PMC7707228/ /pubmed/33366000 http://dx.doi.org/10.1080/23802359.2019.1673245 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Chunlian
Gastineau, Romain
Turmel, Monique
Witkowski, Andrzej
Otis, Christian
Car, Ana
Lemieux, Claude
Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title_full Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title_fullStr Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title_full_unstemmed Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title_short Complete chloroplast genome of the tiny marine diatom Nanofrustulum shiloi (Bacillariophyta) from the Adriatic Sea
title_sort complete chloroplast genome of the tiny marine diatom nanofrustulum shiloi (bacillariophyta) from the adriatic sea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707228/
https://www.ncbi.nlm.nih.gov/pubmed/33366000
http://dx.doi.org/10.1080/23802359.2019.1673245
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