Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909

The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 p...

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Autores principales: Wang, Rongxia, Liu, Hongtao, Wang, Yongbo, Ke, Hongji, Fan, Jiawei, Chen, Fuxiao, Tan, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707232/
https://www.ncbi.nlm.nih.gov/pubmed/33366091
http://dx.doi.org/10.1080/23802359.2019.1676668
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author Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
Tan, Wei
author_facet Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
Tan, Wei
author_sort Wang, Rongxia
collection PubMed
description The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 protein-coding genes (PCGs), 30 tRNA genes, and 2 rRNA genes. Like other species in Caulerpa, the whole cp genome of C. sertularioides f. longipes did not demonstrate an obvious quadripartite structure. A total of 31 microsatellites (SSRs) were identified in the cp genome using MISA. A phylogenetic tree revealed that C. sertularioides f. longipes was closer to Caulerpa cupressoides, which further clarified the phylogenetic relationships of species in Caulerpa.
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spelling pubmed-77072322020-12-22 Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 Wang, Rongxia Liu, Hongtao Wang, Yongbo Ke, Hongji Fan, Jiawei Chen, Fuxiao Tan, Wei Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 protein-coding genes (PCGs), 30 tRNA genes, and 2 rRNA genes. Like other species in Caulerpa, the whole cp genome of C. sertularioides f. longipes did not demonstrate an obvious quadripartite structure. A total of 31 microsatellites (SSRs) were identified in the cp genome using MISA. A phylogenetic tree revealed that C. sertularioides f. longipes was closer to Caulerpa cupressoides, which further clarified the phylogenetic relationships of species in Caulerpa. Taylor & Francis 2019-10-15 /pmc/articles/PMC7707232/ /pubmed/33366091 http://dx.doi.org/10.1080/23802359.2019.1676668 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Rongxia
Liu, Hongtao
Wang, Yongbo
Ke, Hongji
Fan, Jiawei
Chen, Fuxiao
Tan, Wei
Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title_full Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title_fullStr Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title_full_unstemmed Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title_short Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
title_sort complete chloroplast genome of green alga caulerpa sertularioides f. longipes (j.agardh) collins, 1909
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707232/
https://www.ncbi.nlm.nih.gov/pubmed/33366091
http://dx.doi.org/10.1080/23802359.2019.1676668
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