The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)

In this study, we determined the complete mitogenome of Nemipterus virgatus of which the length was 17,073 bp, including 37 canonical mitochondrial genes and 2 non-coding regions. The control region contained termination associated sequence domain (TAS), central conserved domain (CSB-F, CSB-E, CSB-D...

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Autores principales: Wu, Ren-Xie, Zhai, Yun, Miao, Ben-Ben, Niu, Su-Fang, Zhang, Hao-Ran, Liu, Fang, Ou, Chun-Xiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707243/
https://www.ncbi.nlm.nih.gov/pubmed/33366016
http://dx.doi.org/10.1080/23802359.2019.1674708
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author Wu, Ren-Xie
Zhai, Yun
Miao, Ben-Ben
Niu, Su-Fang
Zhang, Hao-Ran
Liu, Fang
Ou, Chun-Xiao
author_facet Wu, Ren-Xie
Zhai, Yun
Miao, Ben-Ben
Niu, Su-Fang
Zhang, Hao-Ran
Liu, Fang
Ou, Chun-Xiao
author_sort Wu, Ren-Xie
collection PubMed
description In this study, we determined the complete mitogenome of Nemipterus virgatus of which the length was 17,073 bp, including 37 canonical mitochondrial genes and 2 non-coding regions. The control region contained termination associated sequence domain (TAS), central conserved domain (CSB-F, CSB-E, CSB-D, CSB-C, and CSB-A), conserved sequence block domain (CSB-1, CSB-2, and CSB-3), and tandem repeat sequence domain (TTD). Nine single nucleotide polymorphisms and three insertion of tandem repeat sequence (each length in 28 bp) were detected between two N. virgatus mitogenomes. The phylogenetic analysis showed that the families Nemipteridae, Sparidae, Centracanthidae, and Lethrinidae did not gather into a monophyly of superfamily Sparoidea in the neighbor-joining tree.
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spelling pubmed-77072432020-12-22 The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes) Wu, Ren-Xie Zhai, Yun Miao, Ben-Ben Niu, Su-Fang Zhang, Hao-Ran Liu, Fang Ou, Chun-Xiao Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete mitogenome of Nemipterus virgatus of which the length was 17,073 bp, including 37 canonical mitochondrial genes and 2 non-coding regions. The control region contained termination associated sequence domain (TAS), central conserved domain (CSB-F, CSB-E, CSB-D, CSB-C, and CSB-A), conserved sequence block domain (CSB-1, CSB-2, and CSB-3), and tandem repeat sequence domain (TTD). Nine single nucleotide polymorphisms and three insertion of tandem repeat sequence (each length in 28 bp) were detected between two N. virgatus mitogenomes. The phylogenetic analysis showed that the families Nemipteridae, Sparidae, Centracanthidae, and Lethrinidae did not gather into a monophyly of superfamily Sparoidea in the neighbor-joining tree. Taylor & Francis 2019-10-07 /pmc/articles/PMC7707243/ /pubmed/33366016 http://dx.doi.org/10.1080/23802359.2019.1674708 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wu, Ren-Xie
Zhai, Yun
Miao, Ben-Ben
Niu, Su-Fang
Zhang, Hao-Ran
Liu, Fang
Ou, Chun-Xiao
The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title_full The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title_fullStr The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title_full_unstemmed The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title_short The second complete mitogenome of Nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily Sparoidea (Teleostei, Perciformes)
title_sort second complete mitogenome of nemipterus virgatus to dissect control region structure and phylogenetic problem of the superfamily sparoidea (teleostei, perciformes)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707243/
https://www.ncbi.nlm.nih.gov/pubmed/33366016
http://dx.doi.org/10.1080/23802359.2019.1674708
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