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The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae)
One new mitochondrial genome of Indonemoura auriformis from the family Nemouridae (Insecta: Plecoptera) was sequenced in the study. The mitochondrial genome has the length of 15,718 bp, encoding 37 genes: 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and 2 ribosomal RNA (rRNA) genes....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707255/ https://www.ncbi.nlm.nih.gov/pubmed/33366008 http://dx.doi.org/10.1080/23802359.2019.1674723 |
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author | Chen, Mengdan Wang, Ying Chen, Jiajia Cao, Jinjun |
author_facet | Chen, Mengdan Wang, Ying Chen, Jiajia Cao, Jinjun |
author_sort | Chen, Mengdan |
collection | PubMed |
description | One new mitochondrial genome of Indonemoura auriformis from the family Nemouridae (Insecta: Plecoptera) was sequenced in the study. The mitochondrial genome has the length of 15,718 bp, encoding 37 genes: 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and 2 ribosomal RNA (rRNA) genes. The whole nucleotide composition biased adenine and thymine with A + T accounting for 69.9%. Nine PCGs and 14 tRNA genes are encoded in the J chain, the other four PCGs, eight tRNAs, and two rRNA genes are encoded in the chain of N. The mitochondrial genome includes 13 gene overlaps and 12 intergenic spacers. Most PCGs strictly use the ATN as start codon, and terminate with traditional stop codon (TAA and TAG). Except the tRNA(Ser(AGN)) seems to lack dihydrogen glycine arm, all tRNA genes of the mitochondrial genome are the typical clover secondary structure. The phylogenetic tree of PCGs dataset based on bayesian inference (BI) and maximum likelihood (ML) analysis show the same tree topology. Both ML and BI analysis support the sister-group relationship between Amphinemuria and Nemoura. Meanwhile, Capniidae is closely related to Taeniopterygidae. |
format | Online Article Text |
id | pubmed-7707255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77072552020-12-22 The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) Chen, Mengdan Wang, Ying Chen, Jiajia Cao, Jinjun Mitochondrial DNA B Resour Mitogenome Announcement One new mitochondrial genome of Indonemoura auriformis from the family Nemouridae (Insecta: Plecoptera) was sequenced in the study. The mitochondrial genome has the length of 15,718 bp, encoding 37 genes: 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and 2 ribosomal RNA (rRNA) genes. The whole nucleotide composition biased adenine and thymine with A + T accounting for 69.9%. Nine PCGs and 14 tRNA genes are encoded in the J chain, the other four PCGs, eight tRNAs, and two rRNA genes are encoded in the chain of N. The mitochondrial genome includes 13 gene overlaps and 12 intergenic spacers. Most PCGs strictly use the ATN as start codon, and terminate with traditional stop codon (TAA and TAG). Except the tRNA(Ser(AGN)) seems to lack dihydrogen glycine arm, all tRNA genes of the mitochondrial genome are the typical clover secondary structure. The phylogenetic tree of PCGs dataset based on bayesian inference (BI) and maximum likelihood (ML) analysis show the same tree topology. Both ML and BI analysis support the sister-group relationship between Amphinemuria and Nemoura. Meanwhile, Capniidae is closely related to Taeniopterygidae. Taylor & Francis 2019-10-07 /pmc/articles/PMC7707255/ /pubmed/33366008 http://dx.doi.org/10.1080/23802359.2019.1674723 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/ |
spellingShingle | Mitogenome Announcement Chen, Mengdan Wang, Ying Chen, Jiajia Cao, Jinjun The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title | The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title_full | The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title_fullStr | The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title_full_unstemmed | The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title_short | The complete mitochondrial genome of a stonefly species, Indonemoura auriformis (Plecoptera: Nemouridae) |
title_sort | complete mitochondrial genome of a stonefly species, indonemoura auriformis (plecoptera: nemouridae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707255/ https://www.ncbi.nlm.nih.gov/pubmed/33366008 http://dx.doi.org/10.1080/23802359.2019.1674723 |
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