The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong

Kandelia obovata is a widely distributed species of mangrove in Eastern Asia. In this study, the complete chloroplast genome sequence of K. obovata was assembled and characterised from high-throughput sequencing data. The chloroplast genome was 168,244 bp in length, consisting of large single-copy (...

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Detalles Bibliográficos
Autores principales: Du, Zhaokui, Li, Junmin, Yang, Dang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707256/
https://www.ncbi.nlm.nih.gov/pubmed/33366018
http://dx.doi.org/10.1080/23802359.2019.1674713
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author Du, Zhaokui
Li, Junmin
Yang, Dang
author_facet Du, Zhaokui
Li, Junmin
Yang, Dang
author_sort Du, Zhaokui
collection PubMed
description Kandelia obovata is a widely distributed species of mangrove in Eastern Asia. In this study, the complete chloroplast genome sequence of K. obovata was assembled and characterised from high-throughput sequencing data. The chloroplast genome was 168,244 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 94,869 bp and 20,088 bp, respectively, which were separated by a pair of 26,618 bp inverted repeat (IR) regions. The genome is predicted to contain 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome is 34.6%. A phylogenetic tree reconstructed by 15 chloroplast genomes reveals that K. obovata is mostly related to Rhizophora stylosa.
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spelling pubmed-77072562020-12-22 The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong Du, Zhaokui Li, Junmin Yang, Dang Mitochondrial DNA B Resour Mitogenome Announcement Kandelia obovata is a widely distributed species of mangrove in Eastern Asia. In this study, the complete chloroplast genome sequence of K. obovata was assembled and characterised from high-throughput sequencing data. The chloroplast genome was 168,244 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 94,869 bp and 20,088 bp, respectively, which were separated by a pair of 26,618 bp inverted repeat (IR) regions. The genome is predicted to contain 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome is 34.6%. A phylogenetic tree reconstructed by 15 chloroplast genomes reveals that K. obovata is mostly related to Rhizophora stylosa. Taylor & Francis 2019-10-07 /pmc/articles/PMC7707256/ /pubmed/33366018 http://dx.doi.org/10.1080/23802359.2019.1674713 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Du, Zhaokui
Li, Junmin
Yang, Dang
The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title_full The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title_fullStr The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title_full_unstemmed The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title_short The complete chloroplast genome of a mangrove Kandelia obovata Sheue, Liu & Yong
title_sort complete chloroplast genome of a mangrove kandelia obovata sheue, liu & yong
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707256/
https://www.ncbi.nlm.nih.gov/pubmed/33366018
http://dx.doi.org/10.1080/23802359.2019.1674713
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