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Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae

Exacum affine Balf.f. ex Regel is a traditional medicinal plant in Yemen and also a popular potted plant. In this study, we sequenced the complete chloroplast genome of E. affine on the Illumina HiSeq Platform. The plastome sequence is 153,311 bp in length with a typical quadripartite structure, con...

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Autores principales: Wang, Jiuli, Cao, Qian, He, Chuncao, Ma, Yulan, Li, Yinglin, Liu, Jinxia, Zhang, Faqi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707271/
https://www.ncbi.nlm.nih.gov/pubmed/33366071
http://dx.doi.org/10.1080/23802359.2019.1676672
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author Wang, Jiuli
Cao, Qian
He, Chuncao
Ma, Yulan
Li, Yinglin
Liu, Jinxia
Zhang, Faqi
author_facet Wang, Jiuli
Cao, Qian
He, Chuncao
Ma, Yulan
Li, Yinglin
Liu, Jinxia
Zhang, Faqi
author_sort Wang, Jiuli
collection PubMed
description Exacum affine Balf.f. ex Regel is a traditional medicinal plant in Yemen and also a popular potted plant. In this study, we sequenced the complete chloroplast genome of E. affine on the Illumina HiSeq Platform. The plastome sequence is 153,311 bp in length with a typical quadripartite structure, containing a pair of inverted repeated (IR) regions of 26,079 bp that are separated by a large single copy (LSC) region of 83,724 bp, and a small single copy (SSC) region of 17,509 bp. The GC content of the whole cp genome was 43.14%. A total of 132 functional genes were annotated, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The complete plastome sequence of E. affine will provide genetic and genomic information to promote its horticulture, officinal utilisation and systematics research of Gentianaceae (especially the tribe Exaceae).
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spelling pubmed-77072712020-12-22 Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae Wang, Jiuli Cao, Qian He, Chuncao Ma, Yulan Li, Yinglin Liu, Jinxia Zhang, Faqi Mitochondrial DNA B Resour Mitogenome Announcement Exacum affine Balf.f. ex Regel is a traditional medicinal plant in Yemen and also a popular potted plant. In this study, we sequenced the complete chloroplast genome of E. affine on the Illumina HiSeq Platform. The plastome sequence is 153,311 bp in length with a typical quadripartite structure, containing a pair of inverted repeated (IR) regions of 26,079 bp that are separated by a large single copy (LSC) region of 83,724 bp, and a small single copy (SSC) region of 17,509 bp. The GC content of the whole cp genome was 43.14%. A total of 132 functional genes were annotated, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The complete plastome sequence of E. affine will provide genetic and genomic information to promote its horticulture, officinal utilisation and systematics research of Gentianaceae (especially the tribe Exaceae). Taylor & Francis 2019-10-11 /pmc/articles/PMC7707271/ /pubmed/33366071 http://dx.doi.org/10.1080/23802359.2019.1676672 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Jiuli
Cao, Qian
He, Chuncao
Ma, Yulan
Li, Yinglin
Liu, Jinxia
Zhang, Faqi
Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title_full Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title_fullStr Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title_full_unstemmed Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title_short Complete chloroplast genome of Exacum affine (Gentianaceae): the first plastome of the tribe Exaceae in the family Gentianaceae
title_sort complete chloroplast genome of exacum affine (gentianaceae): the first plastome of the tribe exaceae in the family gentianaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707271/
https://www.ncbi.nlm.nih.gov/pubmed/33366071
http://dx.doi.org/10.1080/23802359.2019.1676672
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