The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)

The complete plastid genomic data will be helpful to study the origin, evolution and the relationship between the phenotype and environment of Kandelia obovata. In this study, we determined the complete chloroplast genome sequence for K. obovata using Illumina sequencing data. The complete chloropla...

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Autores principales: Chen, De-Qiang, Xiang, Shuang, Liu, Zhong-Jian, Zou, Shuang-Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707281/
https://www.ncbi.nlm.nih.gov/pubmed/33366055
http://dx.doi.org/10.1080/23802359.2019.1674745
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author Chen, De-Qiang
Xiang, Shuang
Liu, Zhong-Jian
Zou, Shuang-Quan
author_facet Chen, De-Qiang
Xiang, Shuang
Liu, Zhong-Jian
Zou, Shuang-Quan
author_sort Chen, De-Qiang
collection PubMed
description The complete plastid genomic data will be helpful to study the origin, evolution and the relationship between the phenotype and environment of Kandelia obovata. In this study, we determined the complete chloroplast genome sequence for K. obovata using Illumina sequencing data. The complete chloroplast sequence is 168,046 bp, including large single-copy (LSC) region of 94,755 bp, small single-copy (SSC) region of 19,953 bp, a pair of invert repeats (IR) regions of 26,669 bp. Plastid genome contains 119 genes, 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis base on 13 plastid genomes indicates that K. obovata is sister to Rhizophora stylosa, which forms a base clade of Myrtales in Rhizophoraceae.
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spelling pubmed-77072812020-12-22 The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae) Chen, De-Qiang Xiang, Shuang Liu, Zhong-Jian Zou, Shuang-Quan Mitochondrial DNA B Resour Mitogenome Announcement The complete plastid genomic data will be helpful to study the origin, evolution and the relationship between the phenotype and environment of Kandelia obovata. In this study, we determined the complete chloroplast genome sequence for K. obovata using Illumina sequencing data. The complete chloroplast sequence is 168,046 bp, including large single-copy (LSC) region of 94,755 bp, small single-copy (SSC) region of 19,953 bp, a pair of invert repeats (IR) regions of 26,669 bp. Plastid genome contains 119 genes, 79 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis base on 13 plastid genomes indicates that K. obovata is sister to Rhizophora stylosa, which forms a base clade of Myrtales in Rhizophoraceae. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707281/ /pubmed/33366055 http://dx.doi.org/10.1080/23802359.2019.1674745 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Chen, De-Qiang
Xiang, Shuang
Liu, Zhong-Jian
Zou, Shuang-Quan
The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title_full The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title_fullStr The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title_full_unstemmed The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title_short The complete chloroplast genome sequence of Kandelia obovata (Rhizophoraceae)
title_sort complete chloroplast genome sequence of kandelia obovata (rhizophoraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707281/
https://www.ncbi.nlm.nih.gov/pubmed/33366055
http://dx.doi.org/10.1080/23802359.2019.1674745
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