Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications

Pennisetum glaucum is a high nutritive-value summer-annual forage crop, popular among livestock producers for grazing, silage, hay, and green chop. In this study, the complete chloroplast genome of the P. glaucum was assembled from the whole genome Illumine sequencing data. The size of the P. glaucu...

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Autores principales: Xu, Jin, Song, Yun, Jing, Xiaoyan, Li, Mingfu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707298/
https://www.ncbi.nlm.nih.gov/pubmed/33366180
http://dx.doi.org/10.1080/23802359.2019.1668312
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author Xu, Jin
Song, Yun
Jing, Xiaoyan
Li, Mingfu
author_facet Xu, Jin
Song, Yun
Jing, Xiaoyan
Li, Mingfu
author_sort Xu, Jin
collection PubMed
description Pennisetum glaucum is a high nutritive-value summer-annual forage crop, popular among livestock producers for grazing, silage, hay, and green chop. In this study, the complete chloroplast genome of the P. glaucum was assembled from the whole genome Illumine sequencing data. The size of the P. glaucum chloroplast genome is 138,119 bp, including a large single-copy region (81,034 bp), a small single-copy region (12,409 bp), and a pair of inverted repeats regions (22,338 bp). The overall GC content of the P. glaucum chloroplast genome was 38.6%. The chloroplast genome of P. glaucum encodes 110 different genes, including 76 protein-coding genes, 30 transfer RNAs (tRNA), and four ribosomal RNAs (rRNA). Phylogenetic analysis confirmed a close relationship of P. glaucum with species in the Panicoideae subfamily of the Poaceae family.
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spelling pubmed-77072982020-12-22 Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications Xu, Jin Song, Yun Jing, Xiaoyan Li, Mingfu Mitochondrial DNA B Resour Mitogenome Announcement Pennisetum glaucum is a high nutritive-value summer-annual forage crop, popular among livestock producers for grazing, silage, hay, and green chop. In this study, the complete chloroplast genome of the P. glaucum was assembled from the whole genome Illumine sequencing data. The size of the P. glaucum chloroplast genome is 138,119 bp, including a large single-copy region (81,034 bp), a small single-copy region (12,409 bp), and a pair of inverted repeats regions (22,338 bp). The overall GC content of the P. glaucum chloroplast genome was 38.6%. The chloroplast genome of P. glaucum encodes 110 different genes, including 76 protein-coding genes, 30 transfer RNAs (tRNA), and four ribosomal RNAs (rRNA). Phylogenetic analysis confirmed a close relationship of P. glaucum with species in the Panicoideae subfamily of the Poaceae family. Taylor & Francis 2019-10-24 /pmc/articles/PMC7707298/ /pubmed/33366180 http://dx.doi.org/10.1080/23802359.2019.1668312 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Xu, Jin
Song, Yun
Jing, Xiaoyan
Li, Mingfu
Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title_full Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title_fullStr Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title_short Characterization of the complete chloroplast genome sequence of Pennisetum glaucum and its phylogenetic implications
title_sort characterization of the complete chloroplast genome sequence of pennisetum glaucum and its phylogenetic implications
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707298/
https://www.ncbi.nlm.nih.gov/pubmed/33366180
http://dx.doi.org/10.1080/23802359.2019.1668312
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