The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China

Salix psammophila C. Wang & Chang Y. Yang is a desert plant species distributed in Northwest China. Here, we report the complete choroplast genome sequences in order to enrich its genetic resource. The total genome is 155,278 bp in length and contains a typical quadripartite structure, including...

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Detalles Bibliográficos
Autores principales: Lu, Dongye, Hao, Lei, Huang, Haiguang, Zhang, Guosheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707305/
https://www.ncbi.nlm.nih.gov/pubmed/33366026
http://dx.doi.org/10.1080/23802359.2019.1675485
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author Lu, Dongye
Hao, Lei
Huang, Haiguang
Zhang, Guosheng
author_facet Lu, Dongye
Hao, Lei
Huang, Haiguang
Zhang, Guosheng
author_sort Lu, Dongye
collection PubMed
description Salix psammophila C. Wang & Chang Y. Yang is a desert plant species distributed in Northwest China. Here, we report the complete choroplast genome sequences in order to enrich its genetic resource. The total genome is 155,278 bp in length and contains a typical quadripartite structure, including a large single copy (LSC) region of 84,457 bp, a small single copy (SSC) region of 15,891 bp, and a pair of inverted repeats (IRs) of 27,465 bp. There were 130 genes in the genome, including 85 protein-coding genes, 37 tRNA genes and eight rRNA genes. The overall CG content in the plastome of S. psammophila is 36.72%. The phylogenetic tree based on 18 complete plastomes of Salicaceae support close relationships among S. psammophila, Salix taoensis, and Salix rehderiana.
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spelling pubmed-77073052020-12-22 The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China Lu, Dongye Hao, Lei Huang, Haiguang Zhang, Guosheng Mitochondrial DNA B Resour Mitogenome Announcement Salix psammophila C. Wang & Chang Y. Yang is a desert plant species distributed in Northwest China. Here, we report the complete choroplast genome sequences in order to enrich its genetic resource. The total genome is 155,278 bp in length and contains a typical quadripartite structure, including a large single copy (LSC) region of 84,457 bp, a small single copy (SSC) region of 15,891 bp, and a pair of inverted repeats (IRs) of 27,465 bp. There were 130 genes in the genome, including 85 protein-coding genes, 37 tRNA genes and eight rRNA genes. The overall CG content in the plastome of S. psammophila is 36.72%. The phylogenetic tree based on 18 complete plastomes of Salicaceae support close relationships among S. psammophila, Salix taoensis, and Salix rehderiana. Taylor & Francis 2019-10-09 /pmc/articles/PMC7707305/ /pubmed/33366026 http://dx.doi.org/10.1080/23802359.2019.1675485 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lu, Dongye
Hao, Lei
Huang, Haiguang
Zhang, Guosheng
The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title_full The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title_fullStr The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title_full_unstemmed The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title_short The complete chloroplast genome of Salix psamaphila, a desert shrub in northwest China
title_sort complete chloroplast genome of salix psamaphila, a desert shrub in northwest china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707305/
https://www.ncbi.nlm.nih.gov/pubmed/33366026
http://dx.doi.org/10.1080/23802359.2019.1675485
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