Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)

In this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy regi...

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Autores principales: Li, Yong-Chao, Zhao, Xin-Liang, Yang, Jing, Fu, Qing-Yun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707329/
https://www.ncbi.nlm.nih.gov/pubmed/33366029
http://dx.doi.org/10.1080/23802359.2019.1673254
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author Li, Yong-Chao
Zhao, Xin-Liang
Yang, Jing
Fu, Qing-Yun
author_facet Li, Yong-Chao
Zhao, Xin-Liang
Yang, Jing
Fu, Qing-Yun
author_sort Li, Yong-Chao
collection PubMed
description In this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy region (17,728 bp) and a large single copy region (84,467 bp). The cp genome of Ph. japonicum encoded 125 genes including 86 protein-coding genes, 31 tRNA genes and eight ribosomal RNA genes. The overall GC content of Ph. japonicum cp genome is 38.3%. By phylogenetic analysis using ML method, Ph. japonicum was placed in family Orobanchaceae and showed the closest relationship with Castilleja paramensis.
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spelling pubmed-77073292020-12-22 Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae) Li, Yong-Chao Zhao, Xin-Liang Yang, Jing Fu, Qing-Yun Mitochondrial DNA B Resour Mitogenome Announcement In this study, we report the complete chloroplast (cp) genome of Phtheirospermum japonicum was determined through Illumina sequencing method. The complete chloroplast genome of Ph. japonicum was 153,397 bp in length and contained a pair of IR regions (25,601 bp) separated by a small single copy region (17,728 bp) and a large single copy region (84,467 bp). The cp genome of Ph. japonicum encoded 125 genes including 86 protein-coding genes, 31 tRNA genes and eight ribosomal RNA genes. The overall GC content of Ph. japonicum cp genome is 38.3%. By phylogenetic analysis using ML method, Ph. japonicum was placed in family Orobanchaceae and showed the closest relationship with Castilleja paramensis. Taylor & Francis 2019-10-09 /pmc/articles/PMC7707329/ /pubmed/33366029 http://dx.doi.org/10.1080/23802359.2019.1673254 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Li, Yong-Chao
Zhao, Xin-Liang
Yang, Jing
Fu, Qing-Yun
Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title_full Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title_fullStr Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title_full_unstemmed Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title_short Characterization of the complete chloroplast genome of Phtheirospermum japonicum (Rhinantheae)
title_sort characterization of the complete chloroplast genome of phtheirospermum japonicum (rhinantheae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707329/
https://www.ncbi.nlm.nih.gov/pubmed/33366029
http://dx.doi.org/10.1080/23802359.2019.1673254
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