Cargando…

Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin

The family Alvinocarididae is the monophyletic taxon which lives restrictively at chemosynthesis-based environments in the deep-sea. Here, for the first time, we report the complete mitogenome of the alvinocaridid vent shrimp Rimicaris variabilis from the North Fiji Basin. The mitogenome was 15,909 ...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Won-Kyung, Kim, Se-Joo, Ju, Se-Jong, Hou, Bo Kyeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707337/
https://www.ncbi.nlm.nih.gov/pubmed/33366046
http://dx.doi.org/10.1080/23802359.2019.1674717
_version_ 1783617324547309568
author Lee, Won-Kyung
Kim, Se-Joo
Ju, Se-Jong
Hou, Bo Kyeng
author_facet Lee, Won-Kyung
Kim, Se-Joo
Ju, Se-Jong
Hou, Bo Kyeng
author_sort Lee, Won-Kyung
collection PubMed
description The family Alvinocarididae is the monophyletic taxon which lives restrictively at chemosynthesis-based environments in the deep-sea. Here, for the first time, we report the complete mitogenome of the alvinocaridid vent shrimp Rimicaris variabilis from the North Fiji Basin. The mitogenome was 15,909 bp in length, with 65.6% AT content. Its protein-coding gene organization was typical of other alvinocaridid shrimps. Based on the phylogenetic tree, R. variabilis was most closely related to Shinkaicaris leurokolos, rather than with other Rimicaris species. To resolve this incongruence between traditional morphological classification and molecular analyses, further mitogenomic analysis of undetermined alvinocaridid taxa is necessary.
format Online
Article
Text
id pubmed-7707337
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77073372020-12-22 Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin Lee, Won-Kyung Kim, Se-Joo Ju, Se-Jong Hou, Bo Kyeng Mitochondrial DNA B Resour Mitogenome Announcement The family Alvinocarididae is the monophyletic taxon which lives restrictively at chemosynthesis-based environments in the deep-sea. Here, for the first time, we report the complete mitogenome of the alvinocaridid vent shrimp Rimicaris variabilis from the North Fiji Basin. The mitogenome was 15,909 bp in length, with 65.6% AT content. Its protein-coding gene organization was typical of other alvinocaridid shrimps. Based on the phylogenetic tree, R. variabilis was most closely related to Shinkaicaris leurokolos, rather than with other Rimicaris species. To resolve this incongruence between traditional morphological classification and molecular analyses, further mitogenomic analysis of undetermined alvinocaridid taxa is necessary. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707337/ /pubmed/33366046 http://dx.doi.org/10.1080/23802359.2019.1674717 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Lee, Won-Kyung
Kim, Se-Joo
Ju, Se-Jong
Hou, Bo Kyeng
Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title_full Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title_fullStr Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title_full_unstemmed Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title_short Complete mitochondrial genome of the hydrothermal vent shrimp Rimicaris variabilis (Decapoda: Caridea: Alvinocarididae) from the North Fiji basin
title_sort complete mitochondrial genome of the hydrothermal vent shrimp rimicaris variabilis (decapoda: caridea: alvinocarididae) from the north fiji basin
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707337/
https://www.ncbi.nlm.nih.gov/pubmed/33366046
http://dx.doi.org/10.1080/23802359.2019.1674717
work_keys_str_mv AT leewonkyung completemitochondrialgenomeofthehydrothermalventshrimprimicarisvariabilisdecapodacarideaalvinocarididaefromthenorthfijibasin
AT kimsejoo completemitochondrialgenomeofthehydrothermalventshrimprimicarisvariabilisdecapodacarideaalvinocarididaefromthenorthfijibasin
AT jusejong completemitochondrialgenomeofthehydrothermalventshrimprimicarisvariabilisdecapodacarideaalvinocarididaefromthenorthfijibasin
AT houbokyeng completemitochondrialgenomeofthehydrothermalventshrimprimicarisvariabilisdecapodacarideaalvinocarididaefromthenorthfijibasin