The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)

Euscaphis japonica is not only an ideal ornamental plant, but also a traditional medicinal plant, which is an extremely valuable species to study. We determined the complete chloroplast genome sequence for E. japonica using Illumina sequencing technology. The complete chloroplast sequence is 160,467...

Descripción completa

Detalles Bibliográficos
Autores principales: Xiang, Shuang, Liu, Xue-Die, Sun, Wei-Hong, Lan, Si-Ren, Liu, Zhong-Jian, Zou, Shuang-Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707347/
https://www.ncbi.nlm.nih.gov/pubmed/33366050
http://dx.doi.org/10.1080/23802359.2019.1674735
_version_ 1783617326891925504
author Xiang, Shuang
Liu, Xue-Die
Sun, Wei-Hong
Lan, Si-Ren
Liu, Zhong-Jian
Zou, Shuang-Quan
author_facet Xiang, Shuang
Liu, Xue-Die
Sun, Wei-Hong
Lan, Si-Ren
Liu, Zhong-Jian
Zou, Shuang-Quan
author_sort Xiang, Shuang
collection PubMed
description Euscaphis japonica is not only an ideal ornamental plant, but also a traditional medicinal plant, which is an extremely valuable species to study. We determined the complete chloroplast genome sequence for E. japonica using Illumina sequencing technology. The complete chloroplast sequence is 160,467 bp in length, including a large single-copy (LSC) region of 88,716 bp, a small single-copy (SSC) region of 18,614 bp, and a pair of invert repeats (IR) regions of 26,568 bp. Plastid genome contains 142 genes, 46 protein-coding genes, 39 tRNA genes, and eight rRNA genes. Phylogenetic analysis base on 14 chloroplast genomes indicates that E. japonica forms an isolated clade and sisters to Glycosmis-Gossypium clade with strong support.
format Online
Article
Text
id pubmed-7707347
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77073472020-12-22 The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae) Xiang, Shuang Liu, Xue-Die Sun, Wei-Hong Lan, Si-Ren Liu, Zhong-Jian Zou, Shuang-Quan Mitochondrial DNA B Resour Mitogenome Announcement Euscaphis japonica is not only an ideal ornamental plant, but also a traditional medicinal plant, which is an extremely valuable species to study. We determined the complete chloroplast genome sequence for E. japonica using Illumina sequencing technology. The complete chloroplast sequence is 160,467 bp in length, including a large single-copy (LSC) region of 88,716 bp, a small single-copy (SSC) region of 18,614 bp, and a pair of invert repeats (IR) regions of 26,568 bp. Plastid genome contains 142 genes, 46 protein-coding genes, 39 tRNA genes, and eight rRNA genes. Phylogenetic analysis base on 14 chloroplast genomes indicates that E. japonica forms an isolated clade and sisters to Glycosmis-Gossypium clade with strong support. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707347/ /pubmed/33366050 http://dx.doi.org/10.1080/23802359.2019.1674735 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by-nc/4.0/
spellingShingle Mitogenome Announcement
Xiang, Shuang
Liu, Xue-Die
Sun, Wei-Hong
Lan, Si-Ren
Liu, Zhong-Jian
Zou, Shuang-Quan
The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title_full The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title_fullStr The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title_full_unstemmed The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title_short The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae)
title_sort complete chloroplast genome sequence of euscaphis japonica (staphyleaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707347/
https://www.ncbi.nlm.nih.gov/pubmed/33366050
http://dx.doi.org/10.1080/23802359.2019.1674735
work_keys_str_mv AT xiangshuang thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT liuxuedie thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT sunweihong thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT lansiren thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT liuzhongjian thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT zoushuangquan thecompletechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT xiangshuang completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT liuxuedie completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT sunweihong completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT lansiren completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT liuzhongjian completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae
AT zoushuangquan completechloroplastgenomesequenceofeuscaphisjaponicastaphyleaceae

Ejemplares similares