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The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)

Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in co...

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Detalles Bibliográficos
Autores principales: Huang, Yuan-Zhen, Zhuang, Li-bin, Zhai, Jun-Wen, Lin, Wen-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707348/
https://www.ncbi.nlm.nih.gov/pubmed/33365977
http://dx.doi.org/10.1080/23802359.2019.1669086
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author Huang, Yuan-Zhen
Zhuang, Li-bin
Zhai, Jun-Wen
Lin, Wen-Jun
author_facet Huang, Yuan-Zhen
Zhuang, Li-bin
Zhai, Jun-Wen
Lin, Wen-Jun
author_sort Huang, Yuan-Zhen
collection PubMed
description Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in conservation and molecular phylogenetic studies on Orchidaceae. The circle genome of D. zhenghuoense was 148,431 bp in length with 37.0% GC content and a large single-copy (LSC) region of 84,167 bp, a small single-copy (SSC) region of 12,588 bp, which were separated by a pair of inverted repeat (IR) region of 25,838 bp. The genome contained 130 genes, including 75 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum likelihood phylogenetic analysis indicated that D. zhenghuoense was the sister to the rest 11 species of Dendrobium tested.
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spelling pubmed-77073482020-12-22 The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) Huang, Yuan-Zhen Zhuang, Li-bin Zhai, Jun-Wen Lin, Wen-Jun Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in conservation and molecular phylogenetic studies on Orchidaceae. The circle genome of D. zhenghuoense was 148,431 bp in length with 37.0% GC content and a large single-copy (LSC) region of 84,167 bp, a small single-copy (SSC) region of 12,588 bp, which were separated by a pair of inverted repeat (IR) region of 25,838 bp. The genome contained 130 genes, including 75 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum likelihood phylogenetic analysis indicated that D. zhenghuoense was the sister to the rest 11 species of Dendrobium tested. Taylor & Francis 2019-10-03 /pmc/articles/PMC7707348/ /pubmed/33365977 http://dx.doi.org/10.1080/23802359.2019.1669086 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Huang, Yuan-Zhen
Zhuang, Li-bin
Zhai, Jun-Wen
Lin, Wen-Jun
The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title_full The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title_fullStr The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title_short The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
title_sort complete chloroplast genome sequence of dendrobium zhenghuoense (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707348/
https://www.ncbi.nlm.nih.gov/pubmed/33365977
http://dx.doi.org/10.1080/23802359.2019.1669086
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