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The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae)
Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in co...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707348/ https://www.ncbi.nlm.nih.gov/pubmed/33365977 http://dx.doi.org/10.1080/23802359.2019.1669086 |
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author | Huang, Yuan-Zhen Zhuang, Li-bin Zhai, Jun-Wen Lin, Wen-Jun |
author_facet | Huang, Yuan-Zhen Zhuang, Li-bin Zhai, Jun-Wen Lin, Wen-Jun |
author_sort | Huang, Yuan-Zhen |
collection | PubMed |
description | Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in conservation and molecular phylogenetic studies on Orchidaceae. The circle genome of D. zhenghuoense was 148,431 bp in length with 37.0% GC content and a large single-copy (LSC) region of 84,167 bp, a small single-copy (SSC) region of 12,588 bp, which were separated by a pair of inverted repeat (IR) region of 25,838 bp. The genome contained 130 genes, including 75 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum likelihood phylogenetic analysis indicated that D. zhenghuoense was the sister to the rest 11 species of Dendrobium tested. |
format | Online Article Text |
id | pubmed-7707348 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77073482020-12-22 The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) Huang, Yuan-Zhen Zhuang, Li-bin Zhai, Jun-Wen Lin, Wen-Jun Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium zhenghuoense is very distinctive among Orchidaceae species with yellowish-green flowers and short peduncle. In this study, we reported the complete chloroplast genome of D. zhenghuoense. Present study suggests that genomic information of D. zhenghuoense would have special importance in conservation and molecular phylogenetic studies on Orchidaceae. The circle genome of D. zhenghuoense was 148,431 bp in length with 37.0% GC content and a large single-copy (LSC) region of 84,167 bp, a small single-copy (SSC) region of 12,588 bp, which were separated by a pair of inverted repeat (IR) region of 25,838 bp. The genome contained 130 genes, including 75 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum likelihood phylogenetic analysis indicated that D. zhenghuoense was the sister to the rest 11 species of Dendrobium tested. Taylor & Francis 2019-10-03 /pmc/articles/PMC7707348/ /pubmed/33365977 http://dx.doi.org/10.1080/23802359.2019.1669086 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Huang, Yuan-Zhen Zhuang, Li-bin Zhai, Jun-Wen Lin, Wen-Jun The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title | The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title_full | The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title_fullStr | The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title_short | The complete chloroplast genome sequence of Dendrobium zhenghuoense (Orchidaceae) |
title_sort | complete chloroplast genome sequence of dendrobium zhenghuoense (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707348/ https://www.ncbi.nlm.nih.gov/pubmed/33365977 http://dx.doi.org/10.1080/23802359.2019.1669086 |
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