Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree

The semi-evergreen azalea, Rhododendron pulchrum, a valuable horticultural and medicinal plant species. Using next-generation sequencing, applying a combination of de novo and reference-guided assembly, we sequenced its complete chloroplast genome. Our study reveals that R. pulchrum have a typical c...

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Autores principales: Shen, Jian Shuang, Li, Xue Qin, Zhu, Xiang Tao, Huang, Xiao Ling, Jin, Song Heng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707349/
https://www.ncbi.nlm.nih.gov/pubmed/33366070
http://dx.doi.org/10.1080/23802359.2019.1676181
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author Shen, Jian Shuang
Li, Xue Qin
Zhu, Xiang Tao
Huang, Xiao Ling
Jin, Song Heng
author_facet Shen, Jian Shuang
Li, Xue Qin
Zhu, Xiang Tao
Huang, Xiao Ling
Jin, Song Heng
author_sort Shen, Jian Shuang
collection PubMed
description The semi-evergreen azalea, Rhododendron pulchrum, a valuable horticultural and medicinal plant species. Using next-generation sequencing, applying a combination of de novo and reference-guided assembly, we sequenced its complete chloroplast genome. Our study reveals that R. pulchrum have a typical cp genome of 136,249 bp in length, without inverted repeat regions. A total of 73 genes, 42 of which are protein coding genes, 29 tRNA genes, two rRNA genes were identified. The GC content of the whole genome is 35.98%. Phylogenetic analysis indicates that R. pulchrum is closely related to the species of Vaccinium oldhamii and Vaccinium macrocarpon.
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spelling pubmed-77073492020-12-22 Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree Shen, Jian Shuang Li, Xue Qin Zhu, Xiang Tao Huang, Xiao Ling Jin, Song Heng Mitochondrial DNA B Resour Mitogenome Announcement The semi-evergreen azalea, Rhododendron pulchrum, a valuable horticultural and medicinal plant species. Using next-generation sequencing, applying a combination of de novo and reference-guided assembly, we sequenced its complete chloroplast genome. Our study reveals that R. pulchrum have a typical cp genome of 136,249 bp in length, without inverted repeat regions. A total of 73 genes, 42 of which are protein coding genes, 29 tRNA genes, two rRNA genes were identified. The GC content of the whole genome is 35.98%. Phylogenetic analysis indicates that R. pulchrum is closely related to the species of Vaccinium oldhamii and Vaccinium macrocarpon. Taylor & Francis 2019-10-11 /pmc/articles/PMC7707349/ /pubmed/33366070 http://dx.doi.org/10.1080/23802359.2019.1676181 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shen, Jian Shuang
Li, Xue Qin
Zhu, Xiang Tao
Huang, Xiao Ling
Jin, Song Heng
Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title_full Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title_fullStr Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title_full_unstemmed Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title_short Complete chloroplast genome of Rhododendron pulchrum, an ornamental medicinal and food tree
title_sort complete chloroplast genome of rhododendron pulchrum, an ornamental medicinal and food tree
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707349/
https://www.ncbi.nlm.nih.gov/pubmed/33366070
http://dx.doi.org/10.1080/23802359.2019.1676181
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