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Complete plastid genome of Dendrobium naungmungense (Orchidaceae)
Dendrobium is one of the most important genera in Orchidaceae. In this study, we used the next-generation sequencing technology and assembled a complete plastid genome of a recently published new species of Dendrobium, D. naungmungense. The plastome was 151,883 bp in length, containing a large singl...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707356/ https://www.ncbi.nlm.nih.gov/pubmed/33366022 http://dx.doi.org/10.1080/23802359.2019.1674736 |
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author | Wang, Min-Hua Ma, Liang |
author_facet | Wang, Min-Hua Ma, Liang |
author_sort | Wang, Min-Hua |
collection | PubMed |
description | Dendrobium is one of the most important genera in Orchidaceae. In this study, we used the next-generation sequencing technology and assembled a complete plastid genome of a recently published new species of Dendrobium, D. naungmungense. The plastome was 151,883 bp in length, containing a large single-copy region (LSC) of 87,189 bp, and a small single-copy region (SSC) of 12,150 bp, and two inverted repeat regions (IR) of 26,272 bp. A total of 123 genes were predicted, including 38 tRNA genes, 8 rRNA genes, and 77 protein-coding genes. Phylogenetic analysis of 44 representative plastome of the genus Dendrobium and outgroup suggested D. naungmungense to be sister to Dendrobium wardianum. |
format | Online Article Text |
id | pubmed-7707356 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77073562020-12-22 Complete plastid genome of Dendrobium naungmungense (Orchidaceae) Wang, Min-Hua Ma, Liang Mitochondrial DNA B Resour Mitogenome Announcement Dendrobium is one of the most important genera in Orchidaceae. In this study, we used the next-generation sequencing technology and assembled a complete plastid genome of a recently published new species of Dendrobium, D. naungmungense. The plastome was 151,883 bp in length, containing a large single-copy region (LSC) of 87,189 bp, and a small single-copy region (SSC) of 12,150 bp, and two inverted repeat regions (IR) of 26,272 bp. A total of 123 genes were predicted, including 38 tRNA genes, 8 rRNA genes, and 77 protein-coding genes. Phylogenetic analysis of 44 representative plastome of the genus Dendrobium and outgroup suggested D. naungmungense to be sister to Dendrobium wardianum. Taylor & Francis 2019-10-09 /pmc/articles/PMC7707356/ /pubmed/33366022 http://dx.doi.org/10.1080/23802359.2019.1674736 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Min-Hua Ma, Liang Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title | Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title_full | Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title_fullStr | Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title_full_unstemmed | Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title_short | Complete plastid genome of Dendrobium naungmungense (Orchidaceae) |
title_sort | complete plastid genome of dendrobium naungmungense (orchidaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707356/ https://www.ncbi.nlm.nih.gov/pubmed/33366022 http://dx.doi.org/10.1080/23802359.2019.1674736 |
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