Cargando…
Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707359/ https://www.ncbi.nlm.nih.gov/pubmed/33365942 http://dx.doi.org/10.1080/23802359.2019.1670114 |
_version_ | 1783617329665409024 |
---|---|
author | Shi, Yancai Duan, Na Liu, Bingbing |
author_facet | Shi, Yancai Duan, Na Liu, Bingbing |
author_sort | Shi, Yancai |
collection | PubMed |
description | Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which contained two inverted repeats (IRs) of 26,282 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 88,920 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 20 selected chloroplast genomes demonstrated that S. cathayensis was close to the species Liquidambar formosana. |
format | Online Article Text |
id | pubmed-7707359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77073592020-12-22 Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China Shi, Yancai Duan, Na Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which contained two inverted repeats (IRs) of 26,282 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 88,920 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 20 selected chloroplast genomes demonstrated that S. cathayensis was close to the species Liquidambar formosana. Taylor & Francis 2019-09-25 /pmc/articles/PMC7707359/ /pubmed/33365942 http://dx.doi.org/10.1080/23802359.2019.1670114 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Shi, Yancai Duan, Na Liu, Bingbing Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title | Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title_full | Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title_fullStr | Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title_full_unstemmed | Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title_short | Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China |
title_sort | complete chloroplast genome sequence of semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707359/ https://www.ncbi.nlm.nih.gov/pubmed/33365942 http://dx.doi.org/10.1080/23802359.2019.1670114 |
work_keys_str_mv | AT shiyancai completechloroplastgenomesequenceofsemiliquidambarcathayensishamamelidaceaearareandendangeredspeciesendemictochina AT duanna completechloroplastgenomesequenceofsemiliquidambarcathayensishamamelidaceaearareandendangeredspeciesendemictochina AT liubingbing completechloroplastgenomesequenceofsemiliquidambarcathayensishamamelidaceaearareandendangeredspeciesendemictochina |