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Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China

Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which...

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Detalles Bibliográficos
Autores principales: Shi, Yancai, Duan, Na, Liu, Bingbing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707359/
https://www.ncbi.nlm.nih.gov/pubmed/33365942
http://dx.doi.org/10.1080/23802359.2019.1670114
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author Shi, Yancai
Duan, Na
Liu, Bingbing
author_facet Shi, Yancai
Duan, Na
Liu, Bingbing
author_sort Shi, Yancai
collection PubMed
description Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which contained two inverted repeats (IRs) of 26,282 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 88,920 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 20 selected chloroplast genomes demonstrated that S. cathayensis was close to the species Liquidambar formosana.
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spelling pubmed-77073592020-12-22 Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China Shi, Yancai Duan, Na Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Semiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which contained two inverted repeats (IRs) of 26,282 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 88,920 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 20 selected chloroplast genomes demonstrated that S. cathayensis was close to the species Liquidambar formosana. Taylor & Francis 2019-09-25 /pmc/articles/PMC7707359/ /pubmed/33365942 http://dx.doi.org/10.1080/23802359.2019.1670114 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shi, Yancai
Duan, Na
Liu, Bingbing
Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title_full Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title_fullStr Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title_full_unstemmed Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title_short Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China
title_sort complete chloroplast genome sequence of semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707359/
https://www.ncbi.nlm.nih.gov/pubmed/33365942
http://dx.doi.org/10.1080/23802359.2019.1670114
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