Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)

Prunus pensylvanica is one of the two native cherry species of North America. We determined the first complete chloroplast genome of P. pensylvanica using genome-skimming approach. The cp genome was 157,953 bp long, with a large single-copy region (LSC) of 86,030 bp and a small single-copy region (S...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Li-Qiu, Cao, Peng-He, Sun, Zhong-Shuai, Yu, Jun-Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707365/
https://www.ncbi.nlm.nih.gov/pubmed/33366084
http://dx.doi.org/10.1080/23802359.2019.1674724
_version_ 1783617331099860992
author Zhang, Li-Qiu
Cao, Peng-He
Sun, Zhong-Shuai
Yu, Jun-Lin
author_facet Zhang, Li-Qiu
Cao, Peng-He
Sun, Zhong-Shuai
Yu, Jun-Lin
author_sort Zhang, Li-Qiu
collection PubMed
description Prunus pensylvanica is one of the two native cherry species of North America. We determined the first complete chloroplast genome of P. pensylvanica using genome-skimming approach. The cp genome was 157,953 bp long, with a large single-copy region (LSC) of 86,030 bp and a small single-copy region (SSC) of 19,135 bp separated by a pair of inverted repeats (IRs) of 26,394 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. pensylvanica is closely related to P. emarginata.
format Online
Article
Text
id pubmed-7707365
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77073652020-12-22 Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) Zhang, Li-Qiu Cao, Peng-He Sun, Zhong-Shuai Yu, Jun-Lin Mitochondrial DNA B Resour Mitogenome Announcement Prunus pensylvanica is one of the two native cherry species of North America. We determined the first complete chloroplast genome of P. pensylvanica using genome-skimming approach. The cp genome was 157,953 bp long, with a large single-copy region (LSC) of 86,030 bp and a small single-copy region (SSC) of 19,135 bp separated by a pair of inverted repeats (IRs) of 26,394 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. pensylvanica is closely related to P. emarginata. Taylor & Francis 2019-10-15 /pmc/articles/PMC7707365/ /pubmed/33366084 http://dx.doi.org/10.1080/23802359.2019.1674724 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Li-Qiu
Cao, Peng-He
Sun, Zhong-Shuai
Yu, Jun-Lin
Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title_full Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title_fullStr Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title_full_unstemmed Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title_short Complete chloroplast genome of Prunus pensylvanica and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
title_sort complete chloroplast genome of prunus pensylvanica and its implications for the phylogenetic position within prunus sensu lato (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707365/
https://www.ncbi.nlm.nih.gov/pubmed/33366084
http://dx.doi.org/10.1080/23802359.2019.1674724
work_keys_str_mv AT zhangliqiu completechloroplastgenomeofprunuspensylvanicaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT caopenghe completechloroplastgenomeofprunuspensylvanicaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT sunzhongshuai completechloroplastgenomeofprunuspensylvanicaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT yujunlin completechloroplastgenomeofprunuspensylvanicaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae

Ejemplares similares