The complete chloroplast genome sequence of Vitis pseudoreticulata

Vitis pseudoreticulata is a wild Vitis species distributed in Southern China and wildly used to crossbreeding based on its resistance to moisture. In this study, the complete chloroplast genome of V. pseudoreticulata was assembled for the first time. The chloroplast genome was 161,065 bp in length,...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Chao, Fu, Peining, Wang, Lei, Zhao, Liping, Xu, Wenping, Zhang, Caixi, Wang, Shiping, Lu, Jiang, Song, Shiren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707381/
https://www.ncbi.nlm.nih.gov/pubmed/33366116
http://dx.doi.org/10.1080/23802359.2019.1676669
_version_ 1783617334648242176
author Ma, Chao
Fu, Peining
Wang, Lei
Zhao, Liping
Xu, Wenping
Zhang, Caixi
Wang, Shiping
Lu, Jiang
Song, Shiren
author_facet Ma, Chao
Fu, Peining
Wang, Lei
Zhao, Liping
Xu, Wenping
Zhang, Caixi
Wang, Shiping
Lu, Jiang
Song, Shiren
author_sort Ma, Chao
collection PubMed
description Vitis pseudoreticulata is a wild Vitis species distributed in Southern China and wildly used to crossbreeding based on its resistance to moisture. In this study, the complete chloroplast genome of V. pseudoreticulata was assembled for the first time. The chloroplast genome was 161,065 bp in length, including two single-copy regions (19,083 and 89,276), which separated by a pair of inverted repeat regions. In totally, 132 genes were predicted, including 87 CDSs, 8 rRNA genes and 37 tRNA genes. The phylogenetic tree analysis showed that V. pseudoreticulata was the closest related to Vitis amurensis.
format Online
Article
Text
id pubmed-7707381
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-77073812020-12-22 The complete chloroplast genome sequence of Vitis pseudoreticulata Ma, Chao Fu, Peining Wang, Lei Zhao, Liping Xu, Wenping Zhang, Caixi Wang, Shiping Lu, Jiang Song, Shiren Mitochondrial DNA B Resour Mitogenome Announcement Vitis pseudoreticulata is a wild Vitis species distributed in Southern China and wildly used to crossbreeding based on its resistance to moisture. In this study, the complete chloroplast genome of V. pseudoreticulata was assembled for the first time. The chloroplast genome was 161,065 bp in length, including two single-copy regions (19,083 and 89,276), which separated by a pair of inverted repeat regions. In totally, 132 genes were predicted, including 87 CDSs, 8 rRNA genes and 37 tRNA genes. The phylogenetic tree analysis showed that V. pseudoreticulata was the closest related to Vitis amurensis. Taylor & Francis 2019-10-18 /pmc/articles/PMC7707381/ /pubmed/33366116 http://dx.doi.org/10.1080/23802359.2019.1676669 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Ma, Chao
Fu, Peining
Wang, Lei
Zhao, Liping
Xu, Wenping
Zhang, Caixi
Wang, Shiping
Lu, Jiang
Song, Shiren
The complete chloroplast genome sequence of Vitis pseudoreticulata
title The complete chloroplast genome sequence of Vitis pseudoreticulata
title_full The complete chloroplast genome sequence of Vitis pseudoreticulata
title_fullStr The complete chloroplast genome sequence of Vitis pseudoreticulata
title_full_unstemmed The complete chloroplast genome sequence of Vitis pseudoreticulata
title_short The complete chloroplast genome sequence of Vitis pseudoreticulata
title_sort complete chloroplast genome sequence of vitis pseudoreticulata
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707381/
https://www.ncbi.nlm.nih.gov/pubmed/33366116
http://dx.doi.org/10.1080/23802359.2019.1676669
work_keys_str_mv AT machao thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT fupeining thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT wanglei thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT zhaoliping thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT xuwenping thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT zhangcaixi thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT wangshiping thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT lujiang thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT songshiren thecompletechloroplastgenomesequenceofvitispseudoreticulata
AT machao completechloroplastgenomesequenceofvitispseudoreticulata
AT fupeining completechloroplastgenomesequenceofvitispseudoreticulata
AT wanglei completechloroplastgenomesequenceofvitispseudoreticulata
AT zhaoliping completechloroplastgenomesequenceofvitispseudoreticulata
AT xuwenping completechloroplastgenomesequenceofvitispseudoreticulata
AT zhangcaixi completechloroplastgenomesequenceofvitispseudoreticulata
AT wangshiping completechloroplastgenomesequenceofvitispseudoreticulata
AT lujiang completechloroplastgenomesequenceofvitispseudoreticulata
AT songshiren completechloroplastgenomesequenceofvitispseudoreticulata

Ejemplares similares