Cargando…
Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae)
Prunus emarginata is a species of Prunus native to western North America.We determined the first complete chloroplast genome of P. emarginata using genome skimming approach. The cp genome was 157,458 bp long, with a large single-copy region (LSC) of 85,567 bp and a small single-copy region (SSC) of...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707383/ https://www.ncbi.nlm.nih.gov/pubmed/33366013 http://dx.doi.org/10.1080/23802359.2019.1674212 |
_version_ | 1783617335130587136 |
---|---|
author | Chen, Lu-Xi Brown, Kevin R. Yi, Xian-Gui Sun, Zhong-Shuai |
author_facet | Chen, Lu-Xi Brown, Kevin R. Yi, Xian-Gui Sun, Zhong-Shuai |
author_sort | Chen, Lu-Xi |
collection | PubMed |
description | Prunus emarginata is a species of Prunus native to western North America.We determined the first complete chloroplast genome of P. emarginata using genome skimming approach. The cp genome was 157,458 bp long, with a large single-copy region (LSC) of 85,567 bp and a small single-copy region (SSC) of 19,121 bp separated by a pair of inverted repeats (IRs) of 26,385 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. emarginata is closely related with Prunus subhirtella var. subhirtella and Prunus yedoensis. |
format | Online Article Text |
id | pubmed-7707383 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77073832020-12-22 Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) Chen, Lu-Xi Brown, Kevin R. Yi, Xian-Gui Sun, Zhong-Shuai Mitochondrial DNA B Resour Mitogenome Announcement Prunus emarginata is a species of Prunus native to western North America.We determined the first complete chloroplast genome of P. emarginata using genome skimming approach. The cp genome was 157,458 bp long, with a large single-copy region (LSC) of 85,567 bp and a small single-copy region (SSC) of 19,121 bp separated by a pair of inverted repeats (IRs) of 26,385 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. emarginata is closely related with Prunus subhirtella var. subhirtella and Prunus yedoensis. Taylor & Francis 2019-10-09 /pmc/articles/PMC7707383/ /pubmed/33366013 http://dx.doi.org/10.1080/23802359.2019.1674212 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Chen, Lu-Xi Brown, Kevin R. Yi, Xian-Gui Sun, Zhong-Shuai Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title | Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title_full | Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title_fullStr | Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title_full_unstemmed | Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title_short | Complete chloroplast genome of Prunus emarginata and its implications for the phylogenetic position within Prunus sensu lato (Rosaceae) |
title_sort | complete chloroplast genome of prunus emarginata and its implications for the phylogenetic position within prunus sensu lato (rosaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707383/ https://www.ncbi.nlm.nih.gov/pubmed/33366013 http://dx.doi.org/10.1080/23802359.2019.1674212 |
work_keys_str_mv | AT chenluxi completechloroplastgenomeofprunusemarginataanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae AT brownkevinr completechloroplastgenomeofprunusemarginataanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae AT yixiangui completechloroplastgenomeofprunusemarginataanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae AT sunzhongshuai completechloroplastgenomeofprunusemarginataanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae |