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Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707399/ https://www.ncbi.nlm.nih.gov/pubmed/33366158 http://dx.doi.org/10.1080/23802359.2019.1680323 |
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author | Shi, Yancai Zhang, Ying Liu, Bingbing |
author_facet | Shi, Yancai Zhang, Ying Liu, Bingbing |
author_sort | Shi, Yancai |
collection | PubMed |
description | Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained two inverted repeats (IRs) of 24,954 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 84,427 bp and 18,294 bp, respectively. The cpDNA contains 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that H. sericophylla was close to congeneric species H. incana. |
format | Online Article Text |
id | pubmed-7707399 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77073992020-12-22 Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China Shi, Yancai Zhang, Ying Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained two inverted repeats (IRs) of 24,954 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 84,427 bp and 18,294 bp, respectively. The cpDNA contains 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that H. sericophylla was close to congeneric species H. incana. Taylor & Francis 2019-10-23 /pmc/articles/PMC7707399/ /pubmed/33366158 http://dx.doi.org/10.1080/23802359.2019.1680323 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Shi, Yancai Zhang, Ying Liu, Bingbing Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title | Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title_full | Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title_fullStr | Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title_full_unstemmed | Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title_short | Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China |
title_sort | complete chloroplast genome sequence of heteroplexis sericophylla (asteraceae), a rare and vulnerable species endemic to china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707399/ https://www.ncbi.nlm.nih.gov/pubmed/33366158 http://dx.doi.org/10.1080/23802359.2019.1680323 |
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