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Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China

Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained t...

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Detalles Bibliográficos
Autores principales: Shi, Yancai, Zhang, Ying, Liu, Bingbing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707399/
https://www.ncbi.nlm.nih.gov/pubmed/33366158
http://dx.doi.org/10.1080/23802359.2019.1680323
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author Shi, Yancai
Zhang, Ying
Liu, Bingbing
author_facet Shi, Yancai
Zhang, Ying
Liu, Bingbing
author_sort Shi, Yancai
collection PubMed
description Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained two inverted repeats (IRs) of 24,954 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 84,427 bp and 18,294 bp, respectively. The cpDNA contains 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that H. sericophylla was close to congeneric species H. incana.
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spelling pubmed-77073992020-12-22 Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China Shi, Yancai Zhang, Ying Liu, Bingbing Mitochondrial DNA B Resour Mitogenome Announcement Heteroplexis sericophylla (Asteraceae) is a rare and vulnerable species endemic to China. Here, we report and characterize the complete chloroplast genome sequence of H. sericophylla based on Illumina paired-end sequencing data. The complete plastid genome was 152,629 bp in length, which contained two inverted repeats (IRs) of 24,954 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 84,427 bp and 18,294 bp, respectively. The cpDNA contains 131 genes, comprising 85 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.3%. The phylogenetic analysis of 17 selected chloroplast genomes demonstrated that H. sericophylla was close to congeneric species H. incana. Taylor & Francis 2019-10-23 /pmc/articles/PMC7707399/ /pubmed/33366158 http://dx.doi.org/10.1080/23802359.2019.1680323 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shi, Yancai
Zhang, Ying
Liu, Bingbing
Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title_full Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title_fullStr Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title_full_unstemmed Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title_short Complete chloroplast genome sequence of Heteroplexis sericophylla (Asteraceae), a rare and vulnerable species endemic to China
title_sort complete chloroplast genome sequence of heteroplexis sericophylla (asteraceae), a rare and vulnerable species endemic to china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707399/
https://www.ncbi.nlm.nih.gov/pubmed/33366158
http://dx.doi.org/10.1080/23802359.2019.1680323
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